IMG/VR Week 5 - Revision history

Cdomin12: /* Presentation */ added space

2019-10-01T04:57:01Z

‎Presentation: added space

2019-10-01T04:56:49Z

‎Presentation: added powerpoint form

2019-10-01T04:54:26Z

added presentation

2019-10-01T04:35:13Z

‎Powerpoint Presentation: deleted ppt

2019-10-01T04:11:22Z

‎5.Access: Is there a license agreement or any restrictions on access to the database?: answer

2019-10-01T03:53:19Z

‎When did the database first go online?: add link

2019-10-01T03:50:38Z

‎When was the last update?: add link

2019-10-01T03:49:36Z

‎2. What species are covered in the database? (If it is a very long list, summarize.): added link

2019-10-01T03:49:03Z

‎Scientific quality of the database: answers

2019-10-01T03:48:04Z

‎How many records does the database contain?: added link

@@ Line 3: / Line 3: @@
 ==Presentation==
 [[File:CDAMpresentationweek5.pdf]]
 [[File:CDAMpresentation.pptx]]

@@ Line 3: / Line 3: @@
 ==Presentation==
 [[File:CDAMpresentationweek5.pdf]]
 ==General information about the database==

@@ Line 1: / Line 1: @@
 {{template:cdomin12}}
+==Presentation==
 ==General information about the database==

← Older revision		Revision as of 04:35, 1 October 2019
Line 3:		Line 3:


−	~~==Powerpoint Presentation==~~
−	~~[[Media: Biological_Databases_Presentation_Week_5_(1).pdf \| IMG/VR Presentation]]~~
	==General information about the database==		==General information about the database==

@@ Line 78: / Line 78: @@
 ===5.Access: Is there a license agreement or any restrictions on access to the database?===
-While there is no license agreement for the database, the single gene browser was not functioning correctly, and thus, we were not able to access data regarding single genes within a genome.
+While there is no license agreement for the database, the single gene browser was not functioning correctly, and thus, we were not able to access data regarding single genes within a genome. However, it says in their policy that if you publish any articles to do with the genome dataset, "the principal investigator" must give you permission. [[https://jgi.doe.gov/user-programs/pmo-overview/policies/ | https://jgi.doe.gov/user-programs/pmo-overview/policies/]]
 ==Summary judgment==

@@ Line 55: / Line 55: @@
 ===5.How current is the database? [[https://img.jgi.doe.gov/cgi-bin/vr/main.cgi | https://img.jgi.doe.gov/cgi-bin/vr/main.cgi]]===
 ====When did the database first go online?====
-The database first went online in 2016.
+The database first went online in 2016. [[https://academic.oup.com/nar/article/45/D1/D457/2333907 | https://academic.oup.com/nar/article/45/D1/D457/2333907]]
 ====How often is the database updated?====

@@ Line 61: / Line 61: @@
 ====When was the last update?====
-The last update was in September 2019.
+The last update was in September 2019. [[https://img.jgi.doe.gov/cgi-bin/vr/main.cgi | scroll to bottom]]
 ==General utility of the database to the scientific community==

@@ Line 41: / Line 41: @@
 ===2. What species are covered in the database? (If it is a very long list, summarize.)===
-Viruses
+Viruses [[https://img.jgi.doe.gov/cgi-bin/vr/main.cgi | https://img.jgi.doe.gov/cgi-bin/vr/main.cgi]]
 ===3. Is the database content useful? I.e., what biological questions can it be used to answer?===

@@ Line 32: / Line 32: @@
 ===1. Does the content appear to completely cover its content domain?===
 Content domain: “annotation, analysis, and distribution” of genome and microbiome datasets
-[[https://img.jgi.doe.gov|mission]]
+[[https://img.jgi.doe.gov|mission | https://img.jgi.doe.gov]]
 ====How many records does the database contain?====
-cultivated reference virus [[https://img.jgi.doe.gov/cgi-bin/vr/main.cgi]]
+cultivated reference virus [[https://img.jgi.doe.gov/cgi-bin/vr/main.cgi | https://img.jgi.doe.gov/cgi-bin/vr/main.cgi]]
 ====What claims do the database owners make about coverage in the corresponding paper?====