Imacarae Week 2 - Revision history

Imacarae: pasted ack and refs

2019-09-19T22:48:57Z

pasted ack and refs

Imacarae: deleted acknowledgments and references

2019-09-15T23:12:37Z

deleted acknowledgments and references

Imacarae: /* Data and Files */ added colors to font

2019-09-12T01:48:45Z

‎Data and Files: added colors to font

Imacarae: /* References */ added comment about aipotu reference

2019-09-12T01:16:43Z

‎References: added comment about aipotu reference

Imacarae: /* Data and Files */ added table notes

2019-09-12T01:07:03Z

‎Data and Files: added table notes

Imacarae: /* Data and Files */ centered graph

2019-09-12T01:03:17Z

‎Data and Files: centered graph

Imacarae: /* References */ changed retrieved dates

2019-09-12T00:52:48Z

‎References: changed retrieved dates

Imacarae: /* References */ added another link to wikihelp

2019-09-12T00:52:25Z

‎References: added another link to wikihelp

Imacarae: /* Methods and Results */ edited specific tasks

2019-09-12T00:51:28Z

‎Methods and Results: edited specific tasks

Imacarae: /* Acknowledgements */ edited links to users

2019-09-12T00:50:42Z

‎Acknowledgements: edited links to users

@@ Line 78: / Line 78: @@
 **Three amino acids with aromatic side chains, Tyr, Trp, and Phe, sequenced in a specific order are the ones that will code for pigment.
 *Yes, this fulfilled the purpose of the project. Because of this, I better understand how protein sequence, and biochemistry as a whole, is directly correlated with phenotypic expression.
 ----
 {{Imacarae}}

@@ Line 78: / Line 78: @@
 **Three amino acids with aromatic side chains, Tyr, Trp, and Phe, sequenced in a specific order are the ones that will code for pigment.
 *Yes, this fulfilled the purpose of the project. Because of this, I better understand how protein sequence, and biochemistry as a whole, is directly correlated with phenotypic expression.
 ----
 {{Imacarae}}

@@ Line 39: / Line 39: @@
 | CgCg
 | Green
-| MSNRHILLVYWRQ
+| MSNRHILLVY<span style="color:green">W</span>RQ
 |-
 ! scope=row | Green-2
 | CbCy
 | Green
-| MSNRHILLVYCRQ
+| MSNRHILLVY<span style="color:green">C</span>RQ
 |-
 ! scope=row | Red
 | CrCr
 | Red
-| MSNRHILLVFCRQ
+| MSNRHILLV<span style="color:red">F</span>CRQ
 |-
 ! scope=row | White
 | CwCw
 | White
-| MSNRHILLVVCRQ
+| MSNRHILLV<span style="color:blue">V</span>CRQ
 |}

@@ Line 86: / Line 86: @@
 ===References===
-*Program used: Aipotu. (2017). Retrieved September 10, 2019, from [[http://aipotu.umb.edu/ http://aipotu.umb.edu/]].
+*Images taken from, program used: Aipotu. (2017). Retrieved September 10, 2019, from [[http://aipotu.umb.edu/ http://aipotu.umb.edu/]].
 *Table/image formatting provided by WikiHelp. (2019). Retrieved September 11, 2019, from [[https://en.wikipedia.org/wiki/Wikipedia:Extended_image_syntax https://en.wikipedia.org/wiki/Wikipedia:Extended_image_syntax]], [[https://en.wikipedia.org/wiki/Help:Table https://en.wikipedia.org/wiki/Help:Table]], and [[https://en.wikipedia.org/wiki/Help:Gallery_tag https://en.wikipedia.org/wiki/Help:Gallery_tag]].
 *Instructions for Week 2 assignment provided by LMU BioDB 2019. (2019). Week 2. Retrieved September 11, 2019, from [[https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_2 https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_2]].

@@ Line 56: / Line 56: @@
 | MSNRHILLVVCRQ
 |}
 <gallery caption="All Pure Colored Proteins" mode=packed heights=200px>

@@ Line 29: / Line 29: @@
 ====Data and Files====
-{| class="wikitable"
+{| class="wikitable" style="margin-left: auto; margin-right: auto; border: none;"
 |+ Characteristics of the Four Starting Organisms
 ! Organism

@@ Line 82: / Line 82: @@
 ===References===
 *Program used: Aipotu. (2017). Retrieved September 10, 2019, from [[http://aipotu.umb.edu/ http://aipotu.umb.edu/]].
-*Table/image formatting provided by WikiHelp. (2019). Retrieved September 10, 2019, from [[https://en.wikipedia.org/wiki/Wikipedia:Extended_image_syntax https://en.wikipedia.org/wiki/Wikipedia:Extended_image_syntax]] and [[https://en.wikipedia.org/wiki/Help:Table https://en.wikipedia.org/wiki/Help:Table]].
+*Table/image formatting provided by WikiHelp. (2019). Retrieved September 10, 2019, from [[https://en.wikipedia.org/wiki/Wikipedia:Extended_image_syntax https://en.wikipedia.org/wiki/Wikipedia:Extended_image_syntax]], [[https://en.wikipedia.org/wiki/Help:Table https://en.wikipedia.org/wiki/Help:Table]], and [[https://en.wikipedia.org/wiki/Help:Gallery_tag https://en.wikipedia.org/wiki/Help:Gallery_tag]].
 *Instructions for Week 2 assignment provided by LMU BioDB 2019. (2019). Week 2. Retrieved September 10, 2019, from [[https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_2 https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_2]].
 ----
 {{Imacarae}}

@@ Line 7: / Line 7: @@
 #Downloaded and opened [[http://aipotu.umb.edu/ Aipotu]].
 #Opened "Biochemistry" tab to view amino acid sequences of Green-1 and White and compare them.
-#*Results to ST(a): For alleles green and white, there are two differences in amino acids. They are a change from Tyrosine to Valine and from Tryptophan to Cysteine in Green-1 to White respectively.
+#*Results to Specific Task (a): For alleles green and white, there are two differences in amino acids. They are a change from Tyrosine to Valine and from Tryptophan to Cysteine in Green-1 to White respectively.
-#*Results to ST(b,c,&d):  What makes the protein pigmented are the change in Val in the 10th position to a different amino acid.What makes the protein a particular color is the change in differences in the 10th or 11th amino acid in the sequence. Colors combine by adding the amino acid that made them different from another color into the original sequence.
+#*Results to Specific Tasks (b,c,&d):  What makes the protein pigmented are the change in Val in the 10th position to a different amino acid.What makes the protein a particular color is the change in differences in the 10th or 11th amino acid in the sequence. Colors combine by adding the amino acid that made them different from another color into the original sequence.
 #Started on the "Genetics" tab to cross organisms to produce "Purple" organism.
 #*Crossed organism Green-2 to Red.
@@ Line 15: / Line 15: @@
 #*Inserted amino acid Tyr between amino acids Phe and Cys to create purple protein.
 #*Inserted amino acid Phe between amino acids Tyr and Cyst to create additional purple protein.
-#*Results to ST(f): The purple protein constructed is sequenced as MSNRHILLVYFCRQ.
+#*Results to Specific Task (f): The purple protein constructed is sequenced as MSNRHILLVYFCRQ.
 #Pure-color, homozygous proteins could be created by the use of amino acids Phe, Tyr, and Trp.
 #*Tyr codes for blue.

@@ Line 75: / Line 75: @@
 ===Acknowledgements===
-*I worked with my homework partner, [[https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/User:Dramir36 David Ramirez]], in class. We worked on learning Aipotu, and how it worked, as well answering the questions in the Biochemistry assignment. We met outside of class on two separate occasions to help each other with figuring out how to add amino acids and get results.
+*I worked with my homework partner, [[User:Dramir36|David Ramirez]], in class. We worked on learning Aipotu, and how it worked, as well answering the questions in the Biochemistry assignment. We met outside of class on two separate occasions to help each other with figuring out how to add amino acids and get results.
-*One of our Biochemistry partners, [[https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/User:Marmas Michael Armas]], did help us with creating pure-color proteins by providing us information on aromatic amino acids that give rise to pigment.
+*One of our Biochemistry partners, [[User:Marmas|Michael Armas]], did help us with creating pure-color proteins by providing us information on aromatic amino acids that give rise to pigment.
 *Except with what is noted above, this individual journal entry was completed by me and not copied from another source.
 [[User:Imacarae|Imacarae]] ([[User talk:Imacarae|talk]]) 23:20, 10 September 2019 (PDT)