Individual Journal Page - Revision history

Imacarae: /* References */ edited references

2019-09-11T06:33:33Z

‎References: edited references

2019-09-11T06:27:55Z

‎Data and Files: formatted picture

2019-09-11T06:20:05Z

‎Acknowledgements: edited acknowledgements

2019-09-11T06:11:31Z

‎Scientific Conclusion: edited sci conclusion

2019-09-11T06:10:40Z

‎Shared Journal Assignment: added journal

2019-09-11T06:10:20Z

‎Imacarae Week 2: added shared journal assignment, acknowledgements, references

2019-09-11T06:08:30Z

‎Imacarae Week 2: answered sci conclusion, moved table and picture to data and files

2019-09-11T06:02:05Z

‎Imacarae Week 2: floated table, added scientific conclusion header

2019-09-11T05:58:13Z

‎Imacarae Week 2: added comment about pure color proteins

2019-09-11T05:55:32Z

‎Imacarae Week 2: added picture caption

← Older revision		Revision as of 06:33, 11 September 2019
Line 78:		Line 78:

	===References===		===References===
		+	*Program used: Aipotu. (2017). Retrieved September 10, 2019, from [[http://aipotu.umb.edu/ http://aipotu.umb.edu/]].
		+	*Table/image formatting provided by WikiHelp. (2019). Retrieved September 10, 2019, from [[https://en.wikipedia.org/wiki/Wikipedia:Extended_image_syntax https://en.wikipedia.org/wiki/Wikipedia:Extended_image_syntax]] and [[https://en.wikipedia.org/wiki/Help:Table https://en.wikipedia.org/wiki/Help:Table]].
		+	*Instructions for Week 2 assignment provided by LMU BioDB 2019. (2019). Week 2. Retrieved September 10, 2019, from [[https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_2 https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_2]].

	==Week 3==		==Week 3==

@@ Line 33: / Line 33: @@
 ====Data and Files====
-[[File:ImacaraePurpleprotein.jpg.png|thumb| Created Purple Protiens]]
+[[File:ImacaraePurpleprotein.jpg.png|350px|right]]
 {| class="wikitable"

← Older revision		Revision as of 06:20, 11 September 2019
Line 72:		Line 72:

	===Acknowledgements===		===Acknowledgements===
		+	*I worked with my homework partner, [[https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/User:Dramir36 David Ramirez]], in class. We worked on learning Aipotu, and how it worked, as well answering the questions in the Biochemistry assignment. We met outside of class on two separate occasions to help each other with figuring out how to add amino acids and get results.
		+	*One of our Biochemistry partners, [[https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/User:Marmas Michael Armas]], did help us with creating pure-color proteins by providing us information on aromatic amino acids that give rise to pigment.
		+	*Except with what is noted above, this individual journal entry was completed by me and not copied from another source.
		+	[[User:Imacarae\|Imacarae]] ([[User talk:Imacarae\|talk]]) 23:20, 10 September 2019 (PDT)

	===References===		===References===

@@ Line 66: / Line 66: @@
 *The main finding of this project was that not only can an organism's alleles be determined by "trial and error" breeding, but its protein that codes for color can be directly changed.
 **The addition/deletion of specific amino acids will allow for the creation of pure-color proteins.
-*Yes, this fulfilled the purpose of the project. Because of this, I better understand how protein sequence is directly correlated with phenotypic expression.
+*Yes, this fulfilled the purpose of the project. Because of this, I better understand how protein sequence, and biochemistry as a whole, is directly correlated with phenotypic expression.
 ===Shared Journal Assignment===

@@ Line 69: / Line 69: @@
 ===Shared Journal Assignment===
-[[https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Class_Journal_Week_2 Week 2]]
+[[https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Class_Journal_Week_2 Week 2 Journal]]
 ===Acknowledgements===

@@ Line 62: / Line 62: @@
 | MSNRHILLVVCRQ
 |}
 ====Scientific Conclusion====
@@ Line 68: / Line 67: @@
 **The addition/deletion of specific amino acids will allow for the creation of pure-color proteins.
 *Yes, this fulfilled the purpose of the project. Because of this, I better understand how protein sequence is directly correlated with phenotypic expression.
 ==Week 3==

@@ Line 20: / Line 20: @@
 ====Methods and Results====
 #Downloaded and opened [[http://aipotu.umb.edu/ Aipotu]].
-#Opened "Biochemistry" tab to view amino acid sequences of Green-1 and White and compare them.[[File:ImacaraePurpleprotein.jpg.png|thumb| Created Purple Protiens]]
+#Opened "Biochemistry" tab to view amino acid sequences of Green-1 and White and compare them.
 #*Results to ST(a): For alleles green and white, there are two differences in amino acids. They are a change from Tyrosine to Valine and from Tryptophan to Cysteine in Green-1 to White respectively.
 #*Results to ST(b,c,&d):  What makes the protein pigmented are the change in Val in the 10th position to a different amino acid.What makes the protein a particular color is the change in differences in the 10th or 11th amino acid in the sequence. Colors combine by adding the amino acid that made them different from another color into the original sequence.
@@ Line 31: / Line 31: @@
 #Pure-color, homozygous proteins could be created by the use of amino acids Phe, Tyr, and Trp.
 #*These amino acids contain aromatic rings which allows for pigment.
-{| class="wikitable floatright"
 |+ Characteristics of the Four Starting Organisms
 ! Organism
@@ Line 58: / Line 62: @@
 | MSNRHILLVVCRQ
 |}
 ====Scientific Conclusion====
 ==Week 3==

@@ Line 29: / Line 29: @@
 #Inserted amino acid Phe between amino acids Tyr and Cyst to create additional protein.
 #*Results to ST(f): The purple protein constructed is sequenced as MSNRHILLVYFCRQ.
-{| class="wikitable" style="margin-left: auto; margin-right: auto; border: none;"
+#Pure-color, homozygous proteins could be created by the use of amino acids Phe, Tyr, and Trp.
 |+ Characteristics of the Four Starting Organisms
 ! Organism
@@ Line 56: / Line 58: @@
 | MSNRHILLVVCRQ
 |}
-*Pure-color, homozygous proteins could be created by the use of amino acids Phe, Tyr, and Trp.
-**These amino acids contain aromatic rings which allows for pigment.
+====Scientific Conclusion====
 ==Week 3==