Jnimmers Week 12/13 - Revision history

Jnimmers: Invoke template

2019-11-26T04:16:55Z

Invoke template

Jnimmers: spelling and deleted extra instructures

2019-11-26T03:19:00Z

spelling and deleted extra instructures

Jnimmers: /* Individual Journal Assignment */ Finished individual journal

2019-11-26T03:18:11Z

‎Individual Journal Assignment: Finished individual journal

Jnimmers: /* Individual Journal Assignment */ formattinf

2019-11-26T02:32:07Z

‎Individual Journal Assignment: formattinf

Jnimmers: /* Individual Journal Assignment */ create category

2019-11-26T02:31:58Z

‎Individual Journal Assignment: create category

Jnimmers: Create page

2019-11-26T02:31:10Z

Create page

New page

== Individual Journal Assignment ==

* Store this journal entry as "''username'' Week 12/13" (i.e., this is the text to place between the square brackets when you link to this page).
* Invoke your template on your journal entry page so that you:
** Link from your journal entry page to this Assignment page.
** Link from your journal entry to your user page.
** Add the "Journal Entry" category to the end of your wiki page.
* Because you have invoked your template on your user page, you should also have a:
** Link from your user page to this Assignment page.
** Link to your journal entry from your user page.
* '''''Note that this week, we will add two new categories, "Group Projects" and a category for your team's name.''' Please do not add these to your individual templates because we want these categories to be precisely used for the Group Projects and your team, respectively.''
* Include both the Acknowledgments and References section as specified by the [[Week_1#Academic_Honesty | Week 1]] assignment.
* For your assignment this week document your individual progress in your '''''electronic laboratory notebook'''''.

=== Electronic Lab Notebook ===

Record your progress toward your team's [[Final_Project_Deliverables | deliverables]] for this week in an '''''electronic lab notebook'''''.

← Older revision		Revision as of 04:16, 26 November 2019
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		+	{{jnimmers}}
	==Electronic Lab Notebook==		==Electronic Lab Notebook==
	===Purpose===		===Purpose===

@@ Line 12: / Line 12: @@
 ===Conclusion===
 A number of deliverables were created and started by our group including the Excel spreadsheet and the ANOVA test/sanity check. Next class the ANOVA test will be rechecked for any errors and the process towards creating the GRNMap will begin.
-===Ackowledgements===
+===Acknowledgements===
 *I would like to thank [[User:Kdahlquist|Dr. Kam D. Dahlquist]] for her continued support and instruction for this assignment. She assisted my team with the understanding of our paper's data and allowed for us to move forward with our analysis.
 *I would like to thank my partners [[Sulfiknights | The Sufiknights]] for working together with me on this assignment as we prepare our deliveribles and our final project presentation.
@@ Line 20: / Line 20: @@
 *Thorsen, M., Lagniel, G., Kristiansson, E., Junot, C., Nerman, O., Labarre, J., & Tamás, M. J. (2007). Quantitative transcriptome, proteome, and sulfur metabolite profiling of the Saccharomyces cerevisiae response to arsenite. Physiological genomics, 30(1), 35-43. DOI: https://doi.org/10.1152/physiolgenomics.00236.2006
 [[Category:Journal Entry]]

← Older revision		Revision as of 03:18, 26 November 2019
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−	== ~~Individual Journal Assignment~~ ==	+	==Electronic Lab Notebook==
		+	===Purpose===
		+	This week, [[User:Ntesfaio \| Naomi Tesfaiohannes]] and I assisted the Data Analysis team in the creation of the spreadsheet that will be used in the analysis and coding of our groups data work. The purpose of this was to prepare the Excel document for further analysis, understanding and to further the group's project to be worked on by the coding team.
		+
		+	===Methods===
		+	*Create a shared excel sheet online.
		+	*Convert the gene names provided by the paper and convert them to their ORF names through the [http://www.yeastract.com/formorftogene.php "ORF List <-> Gene List"] tool at YEASTRACT.
		+	*Make sure that the Standard ID and Systematic names were both available in the data table
		+	*Next week, the Quality Assurance team will work with the Coder/Designers in order to verify the ANOVA tests and sanity checks done by the Data Analysts
		+	===Data & Files===
		+	[[Media:Thorsendata_sulfiknights.xlsx\|Excel Spreadsheet with ANOVA Results]]
		+	===Conclusion===
		+	A number of deliverables were created and started by our group including the Excel spreadsheet and the ANOVA test/sanity check. Next class the ANOVA test will be rechecked for any errors and the process towards creating the GRNMap will begin.
		+	===Ackowledgements===
		+	*I would like to thank [[User:Kdahlquist\|Dr. Kam D. Dahlquist]] for her continued support and instruction for this assignment. She assisted my team with the understanding of our paper's data and allowed for us to move forward with our analysis.
		+	*I would like to thank my partners [[Sulfiknights \| The Sufiknights]] for working together with me on this assignment as we prepare our deliveribles and our final project presentation.
		+	*Except for what is noted above, this individual journal entry was completed by me and not copied from another source. [[User:Jnimmers\|Jnimmers]] ([[User talk:Jnimmers\|talk]]) 19:18, 25 November 2019 (PST)
		+	===References===
		+	*LMU BioDB 2019. (2019). Week 8. Retrieved November 25, 2019, from [https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_8 https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_8].
		+	*Thorsen, M., Lagniel, G., Kristiansson, E., Junot, C., Nerman, O., Labarre, J., & Tamás, M. J. (2007). Quantitative transcriptome, proteome, and sulfur metabolite profiling of the Saccharomyces cerevisiae response to arsenite. Physiological genomics, 30(1), 35-43. DOI: https://doi.org/10.1152/physiolgenomics.00236.2006
		+

	* Store this journal entry as "''username'' Week 12/13" (i.e., this is the text to place between the square brackets when you link to this page).		* Store this journal entry as "''username'' Week 12/13" (i.e., this is the text to place between the square brackets when you link to this page).

← Older revision		Revision as of 02:32, 26 November 2019
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−	[[Category: Journal Entry]]	+	[[Category:Journal Entry]]

← Older revision		Revision as of 02:31, 26 November 2019
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	Record your progress toward your team's [[Final_Project_Deliverables \| deliverables]] for this week in an '''''electronic lab notebook'''''.		Record your progress toward your team's [[Final_Project_Deliverables \| deliverables]] for this week in an '''''electronic lab notebook'''''.
		+
		+
		+	[[Category: Journal Entry]]