Jnimmers week 11 - Revision history

Jnimmers: update annotated bib cite

2019-11-19T23:02:08Z

update annotated bib cite

Jnimmers: formatting

2019-11-19T02:31:51Z

formatting

Show changes

Jnimmers: /* Database Searches */ finish reflection

2019-11-19T02:26:47Z

‎Database Searches: finish reflection

Jnimmers: update database answers

2019-11-19T02:16:27Z

update database answers

Jnimmers: updated database search answers

2019-11-19T02:11:16Z

updated database search answers

Jnimmers: /* Annotated Bibliography #2 */ Create second annotated bibliography

2019-11-19T01:46:10Z

‎Annotated Bibliography #2: Create second annotated bibliography

Jnimmers: Created 2nd annotated bib

2019-11-19T01:35:19Z

Created 2nd annotated bib

Jnimmers: /* = Annotated Bibliography #2 */ delete section

2019-11-19T01:23:25Z

‎= Annotated Bibliography #2: delete section

Jnimmers: Added second annotated bib

2019-11-19T01:23:07Z

Added second annotated bib

Jnimmers: /* Sample Bibliographic Entry */ updated title

2019-11-19T01:16:31Z

‎Sample Bibliographic Entry: updated title

@@ Line 123: / Line 123: @@
 ===Annotated Bibliography #2===
-# A new metabolic pathway of arsenite: arsenic-glutathione complexes are substrates for human arsenic methyltransferase Cyt19. DOI: 10.1007/s00204-004-0620-x
+# Hayakawa, T., Kobayashi, Y., Cui, X. et al. Arch Toxicol (2005) 79: 183. https://doi.org/10.1007/s00204-004-0620-x
 # PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/15526190
 # PubMed Central:  Not available

@@ Line 201: / Line 201: @@
 #* Which advanced search functions were most useful to narrow down the search?  How many results did you get?
 #** I found the "Highly Cited in Field" filter the most useful to narrow down the search to a singular, highly regarded publishing.
-*#* Perform a prospective search on your article in the Web of Science and answer the following:
+ Perform a prospective search on your article in the Web of Science and answer the following:
-*#** How many articles does this article cite?
+#* How many articles does this article cite?
-*#** How many articles cite this article?
+#** 42 articles
 ====Reflection====
 #The choice of keywords in a search has a major impact in the specificity of the results you get. One word can change the results from being as broad as all phylogenetic domains to something as simple as yeast or any other general species type.
-#Pubmed is ad
+#Pubmed is advantageous because most of the articles are from reliable and peer reviewed sources because the credentials required to be put on Pubmed are more stringent than the databases. The problem with PubMed is that it doesn't have very many articles from non-scientific sources, meaning that if one was to do a comparison of understanding between the scientific and commercial field, they would have to go elsewhere.
 ==Purpose==
 *The purpose of this assignment was to further learn how to read a scientific journal and pull pertinent information from it as well as learning how to analyze complex data from an article in order to present the finding of the data to our peers.

@@ Line 201: / Line 201: @@
 #* Which advanced search functions were most useful to narrow down the search?  How many results did you get?
 #** I found the "Highly Cited in Field" filter the most useful to narrow down the search to a singular, highly regarded publishing.
+*#* Perform a prospective search on your article in the Web of Science and answer the following:
 ====Reflection====
 *The primary site used in order to find these articles was Google Scholar by searching the keywords: Arsenic Metabolism, which produced a total of 285,000 results. In order to specify my results, I then searched with the keywords: "Arsenic metabolism yeast"; in order to better find papers that shared greater similarity to the original, assigned paper. This search produced ~41,600results.

@@ Line 174: / Line 174: @@
 # Data are not available.
 ==Purpose==
-*The purpose of this assignment was to futher learn how to read a scientific journal and pull pertainent information from it as well as learning how to analyze complex data from an article in order to present the finding of the data to our peers.
+*The purpose of this assignment was to further learn how to read a scientific journal and pull pertinent information from it as well as learning how to analyze complex data from an article in order to present the finding of the data to our peers.
 ==10 definitions of terms==

@@ Line 160: / Line 160: @@
 # A new metabolic pathway of arsenite: arsenic-glutathione complexes are substrates for human arsenic methyltransferase Cyt19. DOI: 10.1007/s00204-004-0620-x
 # PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/15526190
-# PubMed Central:  http://www.ncbi.nlm.nih.gov/pmc/articles/PMC532028/
+# PubMed Central:  Not available
-# Publisher Full Text (HTML):  http://www.molbiolcell.org/content/15/12/5492.long
+# Publisher Full Text (HTML):  https://link.springer.com/article/10.1007/s00204-004-0620-x#enumeration
-# Publisher Full Text (PDF):  http://www.molbiolcell.org/content/15/12/5492.full.pdf+html
+# Publisher Full Text (PDF):  https://link.springer.com/content/pdf/10.1007%2Fs00204-004-0620-x.pdf
-# Copyright:  2004 by the American Society for Cell Biology (information found on PDF version of article);
+# Copyright: Springer-Verlag 2004
-# Article is not Open Access, but is freely available 2 months after publication, published in the United States, LMU did not pay for the article
+# Article is open access
 # Availability:  in print and online
-# Publisher:  American Society for Cell Biology (scientific society), non-profit, not a member of the OAPA
+# Publisher: Springer-Verlag (non-scientific society, mass publisher of scientific material,for-profit, not a member of the OAPA
-# The journal begain in 1989
+# The Springer-Verlag media company was founded in 1842
-# Peer-reviewed articles: yest
+# Peer-reviewed articles: yes
-# [https://www.molbiolcell.org/editorial-board Editorial board].
+# Not Available
-# Impact factor: 3.512 (2017)
+# Impact factor: 5.98
 # Primary research article
-# Data are not available (dead hyperlink)
+# Data are not available.
 ==Purpose==

@@ Line 156: / Line 156: @@
 # Primary research article
 # [https://aem.asm.org/content/71/2/599/figures-only Figures and Data Tab]
 ==Purpose==
@@ Line 225: / Line 242: @@
 #* Besides the fact that their materials and methods section lacked some small details of the equipment used as well as the confusion surrounding the mathematical model they used, I believe that the authors supported their conclusion very well using the data that they acquired, however, a better/simpler explanation of the research and methods could make this such a more exciting read for a reader.
 ==Conclusion==
 *I found the connection between toxic compounds and the reactions of yeast cells in order to combat the toxicity of said compound.

@@ Line 139: / Line 139: @@
 *# What are the advantages and disadvantages of each of the three databases (Pubmed, Google Scholar, Web of Science)?
-==== Sample Bibliographic Entry ====
+==== Annotated Bibliography #1====
 # Silver, S., & Phung, L. T. (2005). Genes and enzymes involved in bacterial oxidation and reduction of inorganic arsenic. Appl. Environ. Microbiol., 71(2), 599-608. DOI: https://doi.org/10.1128/AEM.71.2.599-608.2005