Marmas Week 11 - Revision history

Marmas: /* References */ fixed type

2019-12-13T07:49:03Z

‎References: fixed type

2019-12-13T06:04:19Z

‎Conclusion: added conclusion

2019-11-18T23:58:21Z

‎Annotated Bibliography: took out spacing

2019-11-18T23:55:30Z

‎Annotated Bibliography: finished annotated bib

2019-11-18T23:11:43Z

‎Annotated Bibliography: fixed another type

2019-11-18T23:10:26Z

‎Annotated Bibliography: fixed typo

2019-11-18T23:08:29Z

‎Annotated Bibliography: added two sources for annotated bib

2019-11-18T23:05:54Z

added header for annotated bibliography

2019-11-14T08:00:23Z

‎Article Outline: couldnt find data

2019-11-14T07:39:06Z

‎Acknowledgments: added statement and signature

@@ Line 141: / Line 141: @@
 ==References==
-*Engel, S. R., Dietrich, F. S., Fisk, D. G., Binkley, G., Balakrishnan, R., Costanzo, M. C., ... & Weng, S. (2014). The reference genome sequence of Saccharomyces cerevisiae: then and now. G3: Genes, Genomes, Genetics, 4(3), 389-398. doi: 10.1534/g3.113.008995
+*Engel, S. R., Dietrich, F. S., Fisk, D. G., Binkley, G., Balakrishnan, R., Costanzo, M. C., ... & Weng, S. (2014). The reference genome sequence of Saccharomyces cerevisiae: then and now. G3: Genes, Genomes, Genetics, 4(3), 389-398. doi: 10.1534/g3.113.008995.
-*Kitagawa, E., Takahashi, J., Momose, Y., & Iwahashi, H. (2002). Effects of the pesticide thiuram: genome-wide screening of indicator genes by yeast DNA microarray. Environmental science & technology, 36(18), 3908-3915. doi: 10.1021/es015705v
+*Kitagawa, E., Takahashi, J., Momose, Y., & Iwahashi, H. (2002). Effects of the pesticide thiuram: genome-wide screening of indicator genes by yeast DNA microarray. Environmental science & technology, 36(18), 3908-3915. doi: 10.1021/es015705v.
-*LMU BioDB 2019. (2019). Week 11. Retrieved November 12, 2019 from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_11
+*LMU BioDB 2019. (2019). Week 11. Retrieved November 12, 2019 from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_11.
 *Smith, A. (2008). Oxford Dictionary of Biochemistry and Molecular Biology: 2nd Edition. Oxford University Press.

← Older revision		Revision as of 06:04, 13 December 2019
Line 132:		Line 132:

	==Conclusion==		==Conclusion==
		+	The assigned article was analyze to understand the purpose and significance of the article. The exercise of examining the article for unknown words made understanding the article much easier. Additionally, other supporting papers were found to further understand the current research being done in microarray analysis involving toxicity and stress. This article is now more understood and the purpose for our bioinformatics study can progress with confidence.

	==Acknowledgments==		==Acknowledgments==

@@ Line 109: / Line 109: @@
 #*Primary Research Article
 #*Data available at: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?token=olixoosedvmdnqr&acc=GSE66918
 *Database Search with Database Tools
 **PubMed
@@ Line 121: / Line 119: @@
 ***I once again used keywords "microarray data," "toxicity," and "yeast."
 ***These keywords were the same as the ones I chose to use on Google Scholar as I wanted to use these keywords on a smaller database. Web of Science pulled up 23 results.
 *Advanced search functions
 **PubMed

@@ Line 93: / Line 93: @@
 #*Primary research article
 #*Data available at: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE101178
 #Pierron, A., Mimoun, S., Murate, L. S., Loiseau, N., Lippi, Y., Bracarense, A. P. F., ... & Oswald, I. P. (2016). Intestinal toxicity of the masked mycotoxin deoxynivalenol-3-β-D-glucoside. Archives of toxicology, 90(8), 2037-2046. doi: 10.1007/s00204-015-1592-8
 #*PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/26404761
@@ Line 108: / Line 109: @@
 #*Primary Research Article
 #*Data available at: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?token=olixoosedvmdnqr&acc=GSE66918
 ==Conclusion==

@@ Line 107: / Line 107: @@
 #*Impact Factor: 5.741
 #*Primary Research Article
-#*Data available at: (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?token=olixoosedvmdnqr&acc=GSE66918
+#*Data available at: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?token=olixoosedvmdnqr&acc=GSE66918
 ==Conclusion==

@@ Line 82: / Line 82: @@
 #*PubMed Central: N/A
 #*Publisher Full Text (HTML): https://academic.oup.com/femsyr/article/19/1/foy121/5184468
-Publisher Full Text (PDF): https://academic.oup.com/femsyr/article-pdf/19/1/foy121/27073366/foy121.pdf
+#*Publisher Full Text (PDF): https://academic.oup.com/femsyr/article-pdf/19/1/foy121/27073366/foy121.pdf
 #*Copyright: 2019 Federation of European Microbiological Societies
 #*Article is not open access, LMU pays for a substriction to this publisher and allows access to students and faculty.

@@ Line 78: / Line 78: @@
 #* I believe that this paper was, for the most part, very straight forward and understandable. There were very few words that I was unable to understand, which is great when readers are not completely on board with the field of study. Some of the figures and graphs are poorly labeled, which made their analysis somewhat difficult. While the methods section was extensive, I felt lost at times when trying to reference this section with the figures and tables in the results section.
 ==Annotated Bibliography==
 ==Conclusion==

@@ Line 45: / Line 45: @@
 #* Mathematical and statistical methods were not used to analyze the data. However, much of the analysis was performed using Munich Information Center for Protein Sequences (MIPS), a yeast database.
 # Are the data publicly available for download?  From which web site?
-#*
+#* The data for this article was not found
 #Briefly state the result shown in each of the figures and tables, not just the ones you are presenting.
 #* What do the X and Y axes represent?

← Older revision		Revision as of 07:39, 14 November 2019
Line 81:		Line 81:

	==Acknowledgments==		==Acknowledgments==
		+	* I would like to acknowledge Dr. Dahlquist for the assistance with organization and the lecture about this group project.
		+	* I would like to acknowledge my group, the [[FunGals]], for their continued support. Team members other than myself are Kaitlyn Nguyen, Emma Young, and Iliana Crespin.
		+	'''Except for what is noted above, this individual journal entry was completed by me and not copied from another source.'''<br>
		+	[[User:Marmas\|Marmas]] ([[User talk:Marmas\|talk]]) 23:39, 13 November 2019 (PST)

	==References==		==References==