Msamdars Week 11 - Revision history

Msamdars: add responses

2019-11-19T04:19:14Z

add responses

Msamdars: /* Responses */ add responses

2019-11-19T03:39:39Z

‎Responses: add responses

Msamdars: /* Annotated Bibliography */ add responses

2019-11-19T03:22:47Z

‎Annotated Bibliography: add responses

Msamdars: /* Reference 1 */ add more bullets

2019-11-19T03:00:08Z

‎Reference 1: add more bullets

Msamdars: /* Reference 1 */ delete star

2019-11-19T02:59:20Z

‎Reference 1: delete star

Msamdars: /* Reference 1 */ add reference 1

2019-11-19T02:58:42Z

‎Reference 1: add reference 1

Msamdars: /* Annotated Bibliography */ add stuff

2019-11-19T02:40:23Z

‎Annotated Bibliography: add stuff

Msamdars: /* Reference 1 */

2019-11-19T02:28:44Z

‎Reference 1

Msamdars: /* Annotated Bibliography */ add two references

2019-11-19T02:18:32Z

‎Annotated Bibliography: add two references

Msamdars: /* Annotated Bibliography */ add template

2019-11-19T00:24:51Z

‎Annotated Bibliography: add template

@@ Line 201: / Line 201: @@
 #* Which terms in which combinations were most useful to narrow down the search?  How many results did you get after narrowing the search?
 #** "yeast potassium deprivation" was very useful to narrow down the search
 # Google Scholar
 #* What original keyword(s) did you use?  How many results did you get?
 #** "yeast potassium" - 1,220,000 results; "yeast potassium deprivation" - 31,400 results; "yeast potassium deprivation math" - 4,420 results
 #* Which terms in which combinations were most useful to narrow down the search?  How many results did you get after narrowing the search?
 #** "yeast potassium mathematical model" was very useful to narrow down my search, it gave me 35,800 results, but the top results were what I was looking for
 # Web of Science
 #* What original keyword(s) did you use?  How many results did you get?
 #* Which terms in which combinations were most useful to narrow down the search?  How many results did you get after narrowing the search?
-# Use the advanced search functions for each of these three databases/tools and answer the following:
+#** "yeast potassium deprivation" was the most effective with 13 results
 #* Which advanced search functions were most useful to narrow down the search?  How many results did you get?
 # Perform a prospective search on your article in the Web of Science and answer the following:
 #* How many articles does this article cite?
 #* How many articles cite this article?
 * Reflect:
 *# What impact does the choice of keywords have on your results?
 *# What are the advantages and disadvantages of each of the three databases (Pubmed, Google Scholar, Web of Science)?
 ==Data & Files==

@@ Line 198: / Line 198: @@
 # PubMed
 #* What original keyword(s) did you use?  How many results did you get?
 #* Which terms in which combinations were most useful to narrow down the search?  How many results did you get after narrowing the search?
 # Google Scholar
 #* What original keyword(s) did you use?  How many results did you get?
 #* Which terms in which combinations were most useful to narrow down the search?  How many results did you get after narrowing the search?
 # Web of Science
 #* What original keyword(s) did you use?  How many results did you get?

@@ Line 132: / Line 132: @@
 # Who is the publisher of the journal?
 #* Wiley-Blackwell
-#*# Is the publisher for-profit or non-profit?
+## Is the publisher for-profit or non-profit?
-#*#* For-profit
+##* For-profit
-#*# Is the publisher a scientific society?
+## Is the publisher a scientific society?
-#*#* No
+##* No
-#*# Does the publisher belong to the [http://oaspa.org/membership/members Open Access Publishers Association]?
+## Does the publisher belong to the [http://oaspa.org/membership/members Open Access Publishers Association]?
-#*#* Yes
+##* Yes
-#*# What country is the journal published in?
+## What country is the journal published in?
-#*#* The website does not say, but the editor-in-chief is based at Cornell University, so I will assume the United States.
+##* The website does not say, but the editor-in-chief is based at Cornell University, so I will assume the United States.
 # How Long has the journal been in operaion? (e.g., browse the archive for the earliest article published)
 #* Since [https://onlinelibrary.wiley.com/toc/13652958/1987/1/1|July of 1987]
@@ Line 171: / Line 171: @@
 #** Yes
 # Is the article available online-only or both in print and online?
-# Who is the publisher of the journal?
+#* Online-only
-#* Is the publisher for-profit or non-profit?
+# Who is the publisher of the journal?
-#* Is the publisher a scientific society (some scientific societies partner with a for-profit publisher, some act as their own non-profit publisher)
+#* (Public Library of Science) PLOS
-#* Does the publisher belong to the [http://oaspa.org/membership/members Open Access Publishers Association]?
+## Is the publisher for-profit or non-profit?
-#* What country is the journal published in?
+##* The publisher is non-profit
-# How Long has the journal been in operaion? (e.g., browse the archive for the earliest article published)
+## Is the publisher a scientific society?
 # Are the articles in this journal peer-reviewed?
 # Provide a link to the scientific advisory board/editorial board of the journal.
 # What is the journal impact factor? (Look to see if it is provided on the journal home page.)
 # Is the article a review or primary research article?
-#* It is a primary research article that describes the
+#* It is a primary research article
 # Are the data associated with this article available?  If so, provide a link to the dataset.
-===Responses
+===Responses===
 # PubMed
 #* What original keyword(s) did you use?  How many results did you get?

@@ Line 132: / Line 132: @@
 # Who is the publisher of the journal?
 #* Wiley-Blackwell
-#* Is the publisher for-profit or non-profit?
+#*# Is the publisher for-profit or non-profit?
-#** For-profit
+#*#* For-profit
-#* Is the publisher a scientific society?
+#*# Is the publisher a scientific society?
-#** No
+#*#* No
-#* Does the publisher belong to the [http://oaspa.org/membership/members Open Access Publishers Association]?
+#*# Does the publisher belong to the [http://oaspa.org/membership/members Open Access Publishers Association]?
-#** Yes
+#*#* Yes
-#* What country is the journal published in?
+#*# What country is the journal published in?
-#** The website does not say, but the editor-in-chief is based at Cornell University, so I will assume the United States.
+#*#* The website does not say, but the editor-in-chief is based at Cornell University, so I will assume the United States.
 # How Long has the journal been in operaion? (e.g., browse the archive for the earliest article published)
 #* Since [https://onlinelibrary.wiley.com/toc/13652958/1987/1/1|July of 1987]

@@ Line 126: / Line 126: @@
 # How is the article available to you?
 #* Via Wiley
-#* Is the article available “Open Access”?
+# Is the article available “Open Access”?
 #* Yes, "Free Access"
 # Is the article available online-only or both in print and online?

@@ Line 112: / Line 112: @@
 ==Annotated Bibliography==
 ===Reference 1===
-# The complete bibliographic reference in the APA style (see [https://owl.purdue.edu/owl/research_and_citation/apa_style/apa_formatting_and_style_guide/reference_list_basic_rules.html this link]), ''with DOI''.
+# The complete bibliographic reference:
 #* Canadell, D., González, A., Casado, C., & Ariño, J. (2015). Functional interactions between potassium and phosphate homeostasis in Saccharomyces cerevisiae. ''Molecular microbiology'', ''95''(3), 555-572.  DOI: 10.1111/mmi.12886
 # The link to the abstract from PubMed.
-#* [https://www.ncbi.nlm.nih.gov/pubmed/22737060|PMID: 22737060]
+#* [https://www.ncbi.nlm.nih.gov/pubmed/25425491|PMID: 25425491]
 # The link to the full text of the article in PubMedCentral (if not available, write N/A).
-#* [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3380843/|PMCID: PMC3380843]
+#* n/a
 # The link to the full text of the article (HTML format) from the publisher web site.
-#* [https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002548|DOI: 10.1371/journal.pcbi.1002548]
+#* [DOI: 10.1111/mmi.12886|https://onlinelibrary.wiley.com/doi/full/10.1111/mmi.12886]
 # The link to the full PDF version of the article from the publisher web site.
-#* [PDF Version|https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002548&type=printable]
+#* [PDF Version|https://onlinelibrary.wiley.com/doi/epdf/10.1111/mmi.12886]
-# Who owns the rights to the article? Look at the first page of the PDF version of the article for the © symbol.  Generally, either the journal/publisher or the authors will hold the copyright.
+# Who owns the rights to the article?
-#* Kahm et al.
+#* John Wiley & Sons
 # How is the article available to you?
-#* Via PLoS Computational Biology
+#* Via Wiley
-#* Is the article available “Open Access” (look for the words “open access” or the “unlocked” icon on the article website or the first page of the PDF)
+#* Is the article available “Open Access”?
-#** Yes
+#* Yes, "Free Access"
-# Is the article available online-only or both in print and online?  Look on the journal website for a “subscription” link.  If that page talks about subscribing to the print edition, then it is available in print.  If not, it is available online-only.
+# Is the article available online-only or both in print and online?
 # Who is the publisher of the journal?
 #* Is the publisher for-profit or non-profit?
@@ Line 139: / Line 139: @@
 # What is the journal impact factor? (Look to see if it is provided on the journal home page.)
 # Is the article a review or primary research article?
 # Are the data associated with this article available?  If so, provide a link to the dataset.
 ===Reference 2===
-# The complete bibliographic reference in the APA style (see [https://owl.purdue.edu/owl/research_and_citation/apa_style/apa_formatting_and_style_guide/reference_list_basic_rules.html this link]), ''with DOI''.
+# The complete bibliographic reference:
 #* Kahm, M., Navarrete, C., Llopis-Torregrosa, V., Herrera, R., Barreto, L., Yenush, L., … Kschischo, M. (2012). Potassium Starvation in Yeast: Mechanisms of Homeostasis Revealed by Mathematical Modeling. ''PLoS Computational Biology'', ''8''(6). DOI: 10.1371/journal.pcbi.1002548
 # The link to the abstract from PubMed.
 # The link to the full text of the article in PubMedCentral (if not available, write N/A).
 # The link to the full text of the article (HTML format) from the publisher web site.
 # The link to the full PDF version of the article from the publisher web site.
-# Who owns the rights to the article? Look at the first page of the PDF version of the article for the © symbol.  Generally, either the journal/publisher or the authors will hold the copyright.
+#* [PDF Version|https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002548&type=printable]
 # How is the article available to you?
-#* Is the article available “Open Access” (look for the words “open access” or the “unlocked” icon on the article website or the first page of the PDF) If '''YES''', stop here.
+#* Via PLoS Computational Biology
-#* If the article is not Open Access, is it available for free after a certain period of time has elapsed?  You would not find the words “open access” or the “unlocked” icon, but you would still be able to access the article.  If '''YES''', stop here.
+#* Is the article available “Open Access”?
-#* Did LMU buy a subscription or pay a fee for your access to this article?  You might see “Loyola Marymount University” or “LMU” on the article website.  Alternately, a list of the journals that LMU pays for can be found at: [http://sq4ya5rf2q.search.serialssolutions.com/ http://sq4ya5rf2q.search.serialssolutions.com/] If '''YES''', stop here.
+#** Yes
-#* Is the article behind a paywall or “subscription-only”?  Your attempts to access it when on the LMU network have failed.  In this case, if you needed the article, you would use the ILLIAD system to request it by logging in here: [https://lmu.illiad.oclc.org/illiad/illiad.dll?Action=99 https://lmu.illiad.oclc.org/illiad/illiad.dll?Action=99].  ''Note that you don’t need to actually request it for this assignment''.
+# Is the article available online-only or both in print and online?
 # Who is the publisher of the journal?
 #* Is the publisher for-profit or non-profit?
@@ Line 166: / Line 169: @@
 # What is the journal impact factor? (Look to see if it is provided on the journal home page.)
 # Is the article a review or primary research article?
 # Are the data associated with this article available?  If so, provide a link to the dataset.

← Older revision		Revision as of 00:24, 19 November 2019
Line 111:		Line 111:

	==Annotated Bibliography==		==Annotated Bibliography==
		+	===Reference 1===
		+	# The complete bibliographic reference in the APA style (see [https://owl.purdue.edu/owl/research_and_citation/apa_style/apa_formatting_and_style_guide/reference_list_basic_rules.html this link]), ''with DOI''.
		+	# The link to the abstract from PubMed.
		+	# The link to the full text of the article in PubMedCentral (if not available, write N/A).
		+	# The link to the full text of the article (HTML format) from the publisher web site.
		+	# The link to the full PDF version of the article from the publisher web site.
		+	# Who owns the rights to the article? Look at the first page of the PDF version of the article for the © symbol. Generally, either the journal/publisher or the authors will hold the copyright.
		+	# How is the article available to you?
		+	#* Is the article available “Open Access” (look for the words “open access” or the “unlocked” icon on the article website or the first page of the PDF) If '''YES''', stop here.
		+	#* If the article is not Open Access, is it available for free after a certain period of time has elapsed? You would not find the words “open access” or the “unlocked” icon, but you would still be able to access the article. If '''YES''', stop here.
		+	#* Did LMU buy a subscription or pay a fee for your access to this article? You might see “Loyola Marymount University” or “LMU” on the article website. Alternately, a list of the journals that LMU pays for can be found at: [http://sq4ya5rf2q.search.serialssolutions.com/ http://sq4ya5rf2q.search.serialssolutions.com/] If '''YES''', stop here.
		+	#* Is the article behind a paywall or “subscription-only”? Your attempts to access it when on the LMU network have failed. In this case, if you needed the article, you would use the ILLIAD system to request it by logging in here: [https://lmu.illiad.oclc.org/illiad/illiad.dll?Action=99 https://lmu.illiad.oclc.org/illiad/illiad.dll?Action=99]. ''Note that you don’t need to actually request it for this assignment''.
		+	# Is the article available online-only or both in print and online? Look on the journal website for a “subscription” link. If that page talks about subscribing to the print edition, then it is available in print. If not, it is available online-only.
		+	# Who is the publisher of the journal?
		+	#* Is the publisher for-profit or non-profit?
		+	#* Is the publisher a scientific society (some scientific societies partner with a for-profit publisher, some act as their own non-profit publisher)
		+	#* Does the publisher belong to the [http://oaspa.org/membership/members Open Access Publishers Association]?
		+	#* What country is the journal published in?
		+	# How Long has the journal been in operaion? (e.g., browse the archive for the earliest article published)
		+	# Are the articles in this journal peer-reviewed?
		+	# Provide a link to the scientific advisory board/editorial board of the journal.
		+	# What is the journal impact factor? (Look to see if it is provided on the journal home page.)
		+	# Is the article a review or primary research article?
		+	# Are the data associated with this article available? If so, provide a link to the dataset.
		+
		+	===Reference 2===
		+	# The complete bibliographic reference in the APA style (see [https://owl.purdue.edu/owl/research_and_citation/apa_style/apa_formatting_and_style_guide/reference_list_basic_rules.html this link]), ''with DOI''.
		+	# The link to the abstract from PubMed.
		+	# The link to the full text of the article in PubMedCentral (if not available, write N/A).
		+	# The link to the full text of the article (HTML format) from the publisher web site.
		+	# The link to the full PDF version of the article from the publisher web site.
		+	# Who owns the rights to the article? Look at the first page of the PDF version of the article for the © symbol. Generally, either the journal/publisher or the authors will hold the copyright.
		+	# How is the article available to you?
		+	#* Is the article available “Open Access” (look for the words “open access” or the “unlocked” icon on the article website or the first page of the PDF) If '''YES''', stop here.
		+	#* If the article is not Open Access, is it available for free after a certain period of time has elapsed? You would not find the words “open access” or the “unlocked” icon, but you would still be able to access the article. If '''YES''', stop here.
		+	#* Did LMU buy a subscription or pay a fee for your access to this article? You might see “Loyola Marymount University” or “LMU” on the article website. Alternately, a list of the journals that LMU pays for can be found at: [http://sq4ya5rf2q.search.serialssolutions.com/ http://sq4ya5rf2q.search.serialssolutions.com/] If '''YES''', stop here.
		+	#* Is the article behind a paywall or “subscription-only”? Your attempts to access it when on the LMU network have failed. In this case, if you needed the article, you would use the ILLIAD system to request it by logging in here: [https://lmu.illiad.oclc.org/illiad/illiad.dll?Action=99 https://lmu.illiad.oclc.org/illiad/illiad.dll?Action=99]. ''Note that you don’t need to actually request it for this assignment''.
		+	# Is the article available online-only or both in print and online? Look on the journal website for a “subscription” link. If that page talks about subscribing to the print edition, then it is available in print. If not, it is available online-only.
		+	# Who is the publisher of the journal?
		+	#* Is the publisher for-profit or non-profit?
		+	#* Is the publisher a scientific society (some scientific societies partner with a for-profit publisher, some act as their own non-profit publisher)
		+	#* Does the publisher belong to the [http://oaspa.org/membership/members Open Access Publishers Association]?
		+	#* What country is the journal published in?
		+	# How Long has the journal been in operaion? (e.g., browse the archive for the earliest article published)
		+	# Are the articles in this journal peer-reviewed?
		+	# Provide a link to the scientific advisory board/editorial board of the journal.
		+	# What is the journal impact factor? (Look to see if it is provided on the journal home page.)
		+	# Is the article a review or primary research article?
		+	# Are the data associated with this article available? If so, provide a link to the dataset.
		+
		+	===Responses
		+	# PubMed
		+	#* What original keyword(s) did you use? How many results did you get?
		+	#* Which terms in which combinations were most useful to narrow down the search? How many results did you get after narrowing the search?
		+	# Google Scholar
		+	#* What original keyword(s) did you use? How many results did you get?
		+	#* Which terms in which combinations were most useful to narrow down the search? How many results did you get after narrowing the search?
		+	# Web of Science
		+	#* What original keyword(s) did you use? How many results did you get?
		+	#* Which terms in which combinations were most useful to narrow down the search? How many results did you get after narrowing the search?
		+	# Use the advanced search functions for each of these three databases/tools and answer the following:
		+	# PubMed
		+	#* Which advanced search functions were most useful to narrow down the search? How many results did you get?
		+	# Google Scholar
		+	#* Which advanced search functions were most useful to narrow down the search? How many results did you get?
		+	# Web of Science
		+	#* Which advanced search functions were most useful to narrow down the search? How many results did you get?
		+	# Perform a prospective search on your article in the Web of Science and answer the following:
		+	#* How many articles does this article cite?
		+	#* How many articles cite this article?
		+	* Reflect:
		+	*# What impact does the choice of keywords have on your results?
		+	*# What are the advantages and disadvantages of each of the three databases (Pubmed, Google Scholar, Web of Science)?

	==Data & Files==		==Data & Files==