Ntesfaio Week 11 - Revision history

Ntesfaio: /* Annotated Bibliography */ added citations

2019-11-18T20:15:39Z

‎Annotated Bibliography: added citations

Ntesfaio: /* Annotated Bibliography #2 */ added to annotated bib #2

2019-11-18T19:20:25Z

‎Annotated Bibliography #2: added to annotated bib #2

Ntesfaio: /* Annotated Bibliography #1 */ added to Annotated bibliography #1

2019-11-18T18:52:26Z

‎Annotated Bibliography #1: added to Annotated bibliography #1

Ntesfaio: /* Annotated Bibliography */ added second reference

2019-11-18T18:14:30Z

‎Annotated Bibliography: added second reference

Ntesfaio: /* Powerpoint Slide */ added powerpoint sldie

2019-11-14T08:01:42Z

‎Powerpoint Slide: added powerpoint sldie

Ntesfaio: /* Outline of your journal article */ added to #11

2019-11-14T06:55:18Z

‎Outline of your journal article: added to #11

Ntesfaio: added references to definitions

2019-11-14T06:50:31Z

added references to definitions

Ntesfaio: /* Outline of your journal article */ added to outline

2019-11-14T06:45:31Z

‎Outline of your journal article: added to outline

Ntesfaio: /* Conclusion */ added to conclusion

2019-11-14T06:43:08Z

‎Conclusion: added to conclusion

Ntesfaio: /* Outline of your journal article */ added to question #16

2019-11-14T06:33:58Z

‎Outline of your journal article: added to question #16

← Older revision		Revision as of 20:15, 18 November 2019
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	It has been cited 73 times		It has been cited 73 times
		+
		+	===Reflection===
		+
		+	Reflect:
		+	What impact does the choice of keywords have on your results?
		+
		+	Having keywords limits the number of results to become more specific to what type of results are desired. Whether it be strain name or stating a type of metal instead of saying "metals" in general it allows for a closer combination of search results.
		+
		+	What are the advantages and disadvantages of each of the three databases (Pubmed, Google Scholar, Web of Science)?
		+
		+	'''Pubmed'''
		+
		+	Advantage: It is published work that is available to the public for free
		+
		+	Disadvantage: There is limited free-access to some journals
		+
		+	'''Google Scholar'''
		+
		+	Advantage: It is simple to navigate through since its search engine is formatted the same as google
		+
		+	Disadvantage: It has a lot of search results that can be overwhelming since the topics are similar to what is being searched but can have varying components
		+
		+	'''Web of Science'''
		+
		+	Advantage: It is marketed as being the world's most trusted publishing database
		+
		+	Disadvantage: It is subscription based meaning that some articles will not be as easy to access

	==Conclusion==		==Conclusion==

@@ Line 298: / Line 298: @@
 *'''The complete bibliographic reference in the APA style (see this link), with DOI.'''
 '''DOI'''
 *'''The link to the abstract from PubMed.'''
 *'''The link to the full text of the article in PubMedCentral (if not available, write N/A).'''
 *'''The link to the full text of the article (HTML format) from the publisher web site.'''
 *'''The link to the full PDF version of the article from the publisher web site.'''
 *'''Who owns the rights to the article? Look at the first page of the PDF version of the article for the © symbol. Generally, either the journal/publisher or the authors will hold the copyright.'''
 *'''How is the article available to you?'''
 *'''Is the article available “Open Access” (look for the words “open access” or the “unlocked” icon on the article website or the first page of the PDF) If YES, stop here.'''
 *'''If the article is not Open Access, is it available for free after a certain period of time has elapsed? You would not find the words “open access” or the “unlocked” icon, but you would still be able to access the article. If YES, stop here.'''
 *'''Is the article available online-only or both in print and online? Look on the journal website for a “subscription” link. If that page talks about subscribing to the print edition, then it is available in print. If not, it is available online-only.'''
 *'''Who is the publisher of the journal?'''
 *'''Is the publisher for-profit or non-profit?'''
 *'''Is the publisher a scientific society (some scientific societies partner with a for-profit publisher, some act as their own non-profit publisher)'''
 *'''Does the publisher belong to the Open Access Publishers Association?'''
 *'''What country is the journal published in?'''
 *'''How Long has the journal been in operaion? (e.g., browse the archive for the earliest article published)'''
 *'''Are the articles in this journal peer-reviewed?'''
 *'''Provide a link to the scientific advisory board/editorial board of the journal.'''
 *'''What is the journal impact factor? (Look to see if it is provided on the journal home page.)'''
 *'''Is the article a review or primary research article?'''
 *'''Are the data associated with this article available? If so, provide a link to the dataset.'''
 You must use these three databases/tools to find the references that you include in your bibliography: PubMed, GoogleScholar, and Web of Science. Answer the following questions as part of your assignment:
@@ Line 349: / Line 392: @@
 *'''What original keyword(s) did you use? How many results did you get?'''
 *'''Which terms in which combinations were most useful to narrow down the search? How many results did you get after narrowing the search?'''
 '''Google Scholar'''
 *'''What original keyword(s) did you use? How many results did you get?'''
 *'''Which terms in which combinations were most useful to narrow down the search? How many results did you get after narrowing the search?'''
 '''Web of Science'''
 *'''What original keyword(s) did you use? How many results did you get?'''
 *'''Which terms in which combinations were most useful to narrow down the search? How many results did you get after narrowing the search?'''
 *'''Which advanced search functions were most useful to narrow down the search? How many results did you get?'''
-'''Web of Science'''
+Web of Science with 52 results
 *'''Perform a prospective search on your article in the Web of Science and answer the following:'''
 *'''How many articles does this article cite?'''
 *'''How many articles cite this article?'''
 ==Conclusion==

@@ Line 214: / Line 214: @@
 *'''Does the publisher belong to the Open Access Publishers Association?'''
 *'''What country is the journal published in?'''
 *'''How Long has the journal been in operaion? (e.g., browse the archive for the earliest article published)'''
 *'''Are the articles in this journal peer-reviewed?'''
 *'''Provide a link to the scientific advisory board/editorial board of the journal.'''
 *'''What is the journal impact factor? (Look to see if it is provided on the journal home page.)'''
 *'''Is the article a review or primary research article?'''
 *'''Are the data associated with this article available? If so, provide a link to the dataset.'''
 You must use these three databases/tools to find the references that you include in your bibliography: PubMed, GoogleScholar, and Web of Science. Answer the following questions as part of your assignment:
@@ Line 236: / Line 251: @@
 *'''What original keyword(s) did you use? How many results did you get?'''
 *'''Which terms in which combinations were most useful to narrow down the search? How many results did you get after narrowing the search?'''
 '''Google Scholar'''
 *'''What original keyword(s) did you use? How many results did you get?'''
 *'''Which terms in which combinations were most useful to narrow down the search? How many results did you get after narrowing the search?'''
 '''Web of Science'''
 *'''What original keyword(s) did you use? How many results did you get?'''
 *'''Which terms in which combinations were most useful to narrow down the search? How many results did you get after narrowing the search?'''
 *'''Which advanced search functions were most useful to narrow down the search? How many results did you get?'''
 '''Web of Science'''
 *'''Perform a prospective search on your article in the Web of Science and answer the following:'''
 *'''How many articles does this article cite?'''
 *'''How many articles cite this article?'''
 ===Annotated Bibliography #2===

@@ Line 152: / Line 152: @@
 ==Annotated Bibliography==
-Create a bibliography of a minimum of 8-10 citations to primary research articles related to your assigned article (2 per group member).
+===Annotated Bibliography #1===
 Each of the 8-10 references in your bibliography needs to have the following information (an example is given in the section below):
 *'''The complete bibliographic reference in the APA style (see this link), with DOI.'''
@@ Line 262: / Line 264: @@
-'''THIS WILL BE COMPLETED TUESDAY NOVEMBER 19'''
+===Annotated Bibliography #2===
 ==Conclusion==

← Older revision		Revision as of 08:01, 14 November 2019
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	==Powerpoint Slide==		==Powerpoint Slide==

		+	[[Media:NtesfaioBiological Databases Presentation -2.pptx\| Presentation Slide]]

	==Annotated Bibliography==		==Annotated Bibliography==

@@ Line 109: / Line 109: @@
 . Are the data publicly available for download? From which web site?
-No, the paper is difficult to find online in a PDF version.
+Microarray data is available on Physiology.org with arsenite treatment.
 .

@@ Line 11: / Line 11: @@
 '''glutathione biosynthesis'''
-Protein involved in the synthesis of the tripeptide glutathione https://www.uniprot.org/keywords/KW-0317
+Protein involved in the synthesis of the tripeptide glutathione
 '''glutathionylation'''
@@ Line 280: / Line 280: @@
 {{Template:Ntesfaio}}

@@ Line 265: / Line 265: @@
 ==Conclusion==
-The purpose of this week's assignment was to begin the annotated bibliography and create a powerpoint presentation of the article assigned.
+The purpose of this week's assignment was to begin the annotated bibliography and create a powerpoint presentation of the article assigned. The assigned article was related to arsenic exposure in yeast cells and the affects that concentrations of arsenic may have.
 ==Acknowledgments==

@@ Line 116: / Line 116: @@
 . What do the X and Y axes represent?
-In Figure 1 there is no x and y axis but rather a flow chart from extracellular sulfate. In Figure 2 the x axis shows metabolite concentrations and the y axis showed time in hours. Figure 3 x axis is the amount of 35S in proteins and GSH. With the y axis being the difference in control and the two arsine concentrations. Figure 4 heat map shows red and green squares. The green indiciates down regulation while red means up-regulation.
+In Figure 1 there is no x and y axis but rather a flow chart from extracellular sulfate. In Figure 2 the x axis shows metabolite concentrations and the y axis showed time in hours. Figure 3 x axis is the amount of 35S in proteins and GSH. With the y axis being the difference in control and the two arsine concentrations. Figure 4 heat map shows red and green squares. The green indicates down regulation while red means up-regulation. Figure 5 shows sulfur/GSH metabolism as growth was monitored after 2-3 days.
 . How were the measurements made?