Ntesfaio Week 9 - Revision history

Ntesfaio: /* Visualizing Your Gene Regulatory Networks with GRNsight */ added = bar

2019-10-31T01:57:21Z

‎Visualizing Your Gene Regulatory Networks with GRNsight: added = bar

2019-10-31T01:56:24Z

‎References: added to references

2019-10-31T00:59:02Z

‎Conclusion: added to conclusion

2019-10-31T00:44:06Z

‎References: added wiki signature

2019-10-31T00:43:42Z

‎Conclusion: added to conclusion

2019-10-31T00:43:14Z

‎Conclusion: had two conclusion sections

2019-10-31T00:42:49Z

‎Conclusion: added to conclusion

2019-10-30T19:36:00Z

added powerpoint

2019-10-30T19:34:36Z

‎Methods: added powerpoint

2019-10-30T19:29:45Z

‎Conclusion: added to conclusion

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 Hap4p is 15.80% in user set, and 5.04% in scerevisiae. The p value is 5.58 x 10^14
-==Visualizing Your Gene Regulatory Networks with GRNsight==
+===Visualizing Your Gene Regulatory Networks with GRNsight===
 *Opened the CSV file into Excel

← Older revision		Revision as of 01:56, 31 October 2019
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	Google Powerpoint Slides		Google Powerpoint Slides
		+
		+	Yeastract. Retrieved on October 30, 2019 from http://yeastract.com/

	GRNSight. Retrieved on October 30, 2019 from https://dondi.github.io/GRNsight/		GRNSight. Retrieved on October 30, 2019 from https://dondi.github.io/GRNsight/

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 ==Conclusion==
-The week 9 assignment introduced YEASTRACT to observe if same expression patterns were present in the genes and if they were regulated by the same transcription factors. The GRNsight was also introduced to analyze the regulatory matrix files and determine which one will be pursued in the future. These results are to be built on in the coming week.
+The week 9 assignment continued on STEM results. The stem profile I chose, 45, was the most significant number of genes assigned. Profile 45 was analyzed further by looking at the number of genes present and going over the p values. The GO list (Gene Ontology) and gene list were also saved. The p value had to do with the number of genes present in the profile. The definitions for GO genes were also analyzed to determine what what present in the profile. This week also introduced YEASTRACT to observe if same expression patterns were present in the genes and if they were regulated by the same transcription factors. The GRNsight was also introduced to analyze the regulatory matrix files and determine which one will be pursued in the future. These results are to be built on in the coming week.
 ==References==

← Older revision		Revision as of 00:44, 31 October 2019
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	GRNSight. Retrieved on October 30, 2019 from https://dondi.github.io/GRNsight/		GRNSight. Retrieved on October 30, 2019 from https://dondi.github.io/GRNsight/
		+
		+	[[User:Ntesfaio\|Ntesfaio]] ([[User talk:Ntesfaio\|talk]]) 17:44, 30 October 2019 (PDT)

	==Data and Files==		==Data and Files==

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 ==Conclusion==
-The purpose of this week's assignment was to continue working on databases.
+The week 9 assignment introduced YEASTRACT to observe if same expression patterns were present in the genes and if they were regulated by the same transcription factors. The GRNsight was also introduced to analyze the regulatory matrix files and determine which one will be pursued in the future. These results are to be built on in the coming week.
 ==References==

← Older revision		Revision as of 00:43, 31 October 2019
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	Methods were copied from [[Week 9]]		Methods were copied from [[Week 9]]

−	~~==Conclusion==~~
−
−	The week 9 assignment introduced YEASTRACT to observe if same expression patterns were present in the genes and if they were regulated by the same transcription factors. The GRNsight was also introduced to analyze the regulatory matrix files and determine which one will be pursued in the future.

	{{Template:Ntesfaio}}		{{Template:Ntesfaio}}

← Older revision		Revision as of 00:42, 31 October 2019
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	==Conclusion==		==Conclusion==
		+
		+	The purpose of this week's assignment was to continue working on databases.

	==References==		==References==

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 [[File:NtesfaioStem profiles pic corrected.jpg|500px|middle]]
-[[Media:Ntesfaio_profile_powerpoint.pdf|powerpoint with all screenshots]]
+[[Media:NTesfaio10 30 2019.pdf|powerpoint with all screenshots]]
 [[Media:NtesfaioDHAP4genelist.zip|DHAP4 gene list]]