Quality Assurance - Revision history

Kdahlquist: /* Milestones */ add note about documentation

2019-11-20T18:21:22Z

‎Milestones: add note about documentation

Kdahlquist: /* Milestone 6: Validation and Quality Assurance on Database */ add finalize and schema diagram

2019-11-20T18:19:44Z

‎Milestone 6: Validation and Quality Assurance on Database: add finalize and schema diagram

Kdahlquist: /* Milestones */ add note about shared journals

2019-11-20T00:40:01Z

‎Milestones: add note about shared journals

Kdahlquist: /* Milestone 4: Making sure expression data has both Sytematic Name and Standard Name ID's */ add link to R

2019-11-19T23:52:59Z

‎Milestone 4: Making sure expression data has both Sytematic Name and Standard Name ID's: add link to R

Kdahlquist: /* Milestone 4: Making sure expression data has both Sytematic Name and Standard Name ID's */ add link to synergizer website

2019-11-19T23:44:06Z

‎Milestone 4: Making sure expression data has both Sytematic Name and Standard Name ID's: add link to synergizer website

Kdahlquist: /* Milestone 3: Working with Data Analysts to understand microarray dataset */ add to sample-data-relationships

2019-11-19T23:39:32Z

‎Milestone 3: Working with Data Analysts to understand microarray dataset: add to sample-data-relationships

Kdahlquist: /* Guild Members */ filled in guild members

2019-11-19T19:17:46Z

‎Guild Members: filled in guild members

Kdahlquist: /* Milestone 3: Working with Data Analysts to understand microarray dataset */ fix formatting

2019-11-19T19:15:18Z

‎Milestone 3: Working with Data Analysts to understand microarray dataset: fix formatting

Kdahlquist: /* Milestone 3: Quality Assurance of MS Access Database */ add in details for QA milestones

2019-11-19T19:14:47Z

‎Milestone 3: Quality Assurance of MS Access Database: add in details for QA milestones

Kdahlquist: /* Milestone 2: Journal Club Presentation */ fix phrasing

2019-11-07T23:51:37Z

‎Milestone 2: Journal Club Presentation: fix phrasing

← Older revision		Revision as of 18:21, 20 November 2019
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	* Data Analysts and QA's who have a partner in their group can have a shared ''individual'' journal entry. Both students will be given the same grade and are expected to contribute equally to the electronic lab notebook.		* Data Analysts and QA's who have a partner in their group can have a shared ''individual'' journal entry. Both students will be given the same grade and are expected to contribute equally to the electronic lab notebook.
		+	* Detailed notes should be taken throughout consistent with reproducible research and contributing to the final deliverables.

	=== Milestone 1: Annotated Bibliography ===		=== Milestone 1: Annotated Bibliography ===

@@ Line 70: / Line 70: @@
 ** The QA will make sure that both the ID (SGD systematic name) and Standard Names are included in each expression table and are correct.
 * QA's will communicate to the Coder/Designers any changes needed to the database.
 {{Final Project Links}}
 [[Category:Group Projects]]

← Older revision		Revision as of 00:40, 20 November 2019
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	The milestones do not necessarily correspond to particular weeks; instead they are sets of tasks grouped together.		The milestones do not necessarily correspond to particular weeks; instead they are sets of tasks grouped together.
		+
		+	* Data Analysts and QA's who have a partner in their group can have a shared ''individual'' journal entry. Both students will be given the same grade and are expected to contribute equally to the electronic lab notebook.

	=== Milestone 1: Annotated Bibliography ===		=== Milestone 1: Annotated Bibliography ===

@@ Line 46: / Line 46: @@
 * One way to do this is use the [http://www.yeastract.com/formorftogene.php "ORF List <-> Gene List"] tool at YEASTRACT.
 * The [http://llama.mshri.on.ca/synergizer/translate/ Synergizer] website may also be helpful.
 === Milestone 5: Work with Coder/Designers to Design a Database to Store Time-course Microarray Data from four sources ===

@@ Line 45: / Line 45: @@
 * You will need to check the IDs in the expression data and potentially populate one or both of these fields.
 * One way to do this is use the [http://www.yeastract.com/formorftogene.php "ORF List <-> Gene List"] tool at YEASTRACT.
 === Milestone 5: Work with Coder/Designers to Design a Database to Store Time-course Microarray Data from four sources ===

@@ Line 31: / Line 31: @@
 ** [https://sgd-prod-upload.s3.amazonaws.com/S000204367/Thorsen_2007_PMID_17327492.zip Thorsen et al. (2007)]
 ** Along with the Data Analysts, make a "sample-data relationship table" that lists all of the samples (microarray chips), noting the treatment, time point, and replicate number.
 * Come up with consistent column headers that summarize this information
 ** For example, the Dahlquist Lab microarray data used strain_LogFC_timepoint-replicate number, as in wt_LogFC_t15-1.

@@ Line 5: / Line 5: @@
 == Guild Members ==
-* Jonar Cowan
+* [[FunGals]]: Iliana
-* Christina Dominguez
+* [[Skinny Genes]]: Jonar, Christina
-* Naomi Tesfaiohannes
+* [[Sulfiknights]]: Naomi, Joey
 == Milestones ==

@@ Line 33: / Line 33: @@
 * Come up with consistent column headers that summarize this information
 ** For example, the Dahlquist Lab microarray data used strain_LogFC_timepoint-replicate number, as in wt_LogFC_t15-1.
- Organize the data in a worksheet in an Excel workbook so that:
+* Organize the data in a worksheet in an Excel workbook so that:
 * ID is in the first column
 * Data columns are to the right, in increasing chronological order, using the column header pattern you created

@@ Line 21: / Line 21: @@
 * The QA's will work with their teams to create and deliver a Journal Club presentation about to their team's assigned paper.
-=== Milestone 3: Quality Assurance of MS Access Database ===
+=== Milestone 3: Working with Data Analysts to understand microarray dataset ===
-* The QA team member is the link between the Coder/Designer and the Data Analyst.  He or she needs to know the details of the microarray dataset being analyzed so that the database being designed and populated by the Coder/Designer is correct and useful for the Data Analyst.
+As an overview, the QA team member is the link between the Coder/Designer and the Data Analyst.  He or she needs to know the details of the microarray dataset being analyzed so that the database being designed and populated by the Coder/Designer is correct and useful for the Data Analyst. The QA will independently check that all of the data retrieved from SGD is present and accurately represented in the MS Access database. The QA will also provide assistance to the Data Analyst, making sure that the data analysis steps are being performed correctly and are being correctly documented.
-* The QA will independently check that all of the data retrieved from SGD is present and accurately represented in the MS Access database.
-* The QA will also provide assistance to the Data Analyst, making sure that the data analysis steps are being performed correctly and are being correctly documented.
+Initially, the QA's will need to do the following:
 {{Final Project Links}}
 [[Category:Group Projects]]

@@ Line 19: / Line 19: @@
 === Milestone 2: Journal Club Presentation ===
-* The QA's will work with their teams to create and deliver a Journal Club presentation about a particular paper reporting yeast timecourse DNA microarray data.
+* The QA's will work with their teams to create and deliver a Journal Club presentation about to their team's assigned paper.
 === Milestone 3: Quality Assurance of MS Access Database ===