Week 1 - Revision history

Kdahlquist: Undo revision 386 by Kdahlquist (talk) because it was a sample

2019-09-03T22:14:45Z

Undo revision 386 by Kdahlquist (talk) because it was a sample

Kdahlquist: added sample text

2019-09-03T22:11:54Z

added sample text

Kdahlquist: remove under construction flag

2019-08-27T20:12:57Z

remove under construction flag

Kdahlquist: /* References */ fix formatting

2019-08-27T20:10:46Z

‎References: fix formatting

Kdahlquist: /* References */ update with biol388

2019-08-27T20:10:32Z

‎References: update with biol388

Kdahlquist: /* Acknowledgments */ copy over from biol388

2019-08-27T20:08:28Z

‎Acknowledgments: copy over from biol388

Kdahlquist: /* Practice your Wiki Skills */ copy over from biol388

2019-08-27T20:06:52Z

‎Practice your Wiki Skills: copy over from biol388

Kdahlquist: /* Practice your Wiki Skills */ remove dondi

2019-08-27T18:17:46Z

‎Practice your Wiki Skills: remove dondi

Kdahlquist: /* Practice your Wiki Skills */ separate out extra bullet points

2019-08-27T18:17:07Z

‎Practice your Wiki Skills: separate out extra bullet points

Kdahlquist: /* Practice your Wiki Skills */ fix jpg file extension

2019-08-27T18:16:12Z

‎Practice your Wiki Skills: fix jpg file extension

← Older revision		Revision as of 22:14, 3 September 2019
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−	~~This is a sample edit.~~
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	'''This journal entry is due on Thursday, September 5, at 12:01am Pacific time.'''		'''This journal entry is due on Thursday, September 5, at 12:01am Pacific time.'''

← Older revision		Revision as of 22:11, 3 September 2019
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		+	This is a sample edit.
		+
	'''This journal entry is due on Thursday, September 5, at 12:01am Pacific time.'''		'''This journal entry is due on Thursday, September 5, at 12:01am Pacific time.'''

← Older revision		Revision as of 20:12, 27 August 2019
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−	~~{{Under Construction}}~~
−
	'''This journal entry is due on Thursday, September 5, at 12:01am Pacific time.'''		'''This journal entry is due on Thursday, September 5, at 12:01am Pacific time.'''

@@ Line 134: / Line 134: @@
 * The references should be formatted according to the [https://owl.purdue.edu/owl/research_and_citation/using_research/documents/20180719CitationChart.pdf APA guidelines].
 * For more detailed guidelines, please see the document [[Media:BIOL367_Fall2019_GuidelinesforLiteratureCitations.pdf | Guidelines for Literature Citations in a Scientific Paper]] that you were given on the first day of class.
-* Cite the appropriate weekly Assignment page.  For example, the citation for the [[Week 1]] Assignment page is:
+* Cite the appropriate weekly Assignment page.  For example, the citation for the [[Week 1]] Assignment page is: LMU BioDB 2019. (2019). Week 1. Retrieved August 29, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_1
 * Even if you have nothing else to cite, the References section must be present and include the citation to the appropriate weekly assignment page.

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 *In this section, you need to provide properly formatted citations to any '''''content''''' that was not entirely of your own devising.  This includes, but is not limited to:
 ** data
 ** facts
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 * Do not include extraneous references that you do not cite or use on your page.
 * The references in this section should be accompanied by ''in text citations'' on your page that refer to these references.
-* The references should be formatted according to the [http://libguides.lmu.edu/c.php?g=324079&p=2174128 APA guidelines].
+* The references should be formatted according to the [https://owl.purdue.edu/owl/research_and_citation/using_research/documents/20180719CitationChart.pdf APA guidelines].
-* For more detailed guidelines, please see the document [[Media:BIOL367_Fall2017_GuidelinesforLiteratureCitations.pdf | Guidelines for Literature Citations in a Scientific Paper]] that you were given on the first day of class.
+* For more detailed guidelines, please see the document [[Media:BIOL367_Fall2019_GuidelinesforLiteratureCitations.pdf | Guidelines for Literature Citations in a Scientific Paper]] that you were given on the first day of class.
 * Cite the appropriate weekly Assignment page.  For example, the citation for the [[Week 1]] Assignment page is:
-  LMU BioDB 2017. (2017). Week 1. Retrieved August 29, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_1
+  LMU BioDB 2019. (2019). Week 1. Retrieved August 29, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_1
 * Even if you have nothing else to cite, the References section must be present and include the citation to the appropriate weekly assignment page.

@@ Line 112: / Line 112: @@
 ==== Acknowledgments ====
-In this section, you need to acknowledge anyone who assisted you with your assignment, either in person, electronically, or even anonymously without their knowledge (see below).
+In this section, you need to acknowledge anyone who assisted you with your assignment, either in person, electronically, or even anonymously without their knowledge.
-# You '''''must''''' acknowledge your homework partner or team members with whom you worked, giving details of the nature of the collaboration.  An appropriate statement could be (but is not limited to) the following:
+# You '''''must''''' acknowledge your homework partner or team members with whom you worked, giving details of the nature of the collaboration.  You should include when and how you met and what content you worked on together.  An appropriate statement could be (but is not limited to) the following:
 #* I worked with my homework partner (give name and link name to their user page) in class.  We met face-to-face one time outside of class.  We texted/e-mailed/chatted online three times.  We worked on the <details> portion of the assignment together.
-# Acknowledge anyone else you worked with who was not your assigned partner.  This could be Dr. Dahlquist or Dr. Dionisio (for example, via office hours), other students in the class, or even other students or faculty outside of the class.
+# Acknowledge anyone else you worked with who was not your assigned partner.  This could be Dr. Dahlquist (for example, via office hours), the TA, other students in the class, or even other students or faculty outside of the class.
-# If you copied <code>wiki syntax</code> or a particular ''style'' from another wiki page, acknowledge that here.  Provide a link to the page from which you copied the syntax or style.  If you need to reference '''''content''''', use your References section (see below).
+# If you copied <code>wiki syntax</code> or a particular ''style'' from another wiki page, acknowledge that here.  Provide the user name of the original page, if possible, and provide a link to the page from which you copied the syntax or style.
-# You '''must''' also include this statement unless otherwise noted:  "While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source."
+# If you need to reference '''''content''''' (such as the methods of a protocol), that belongs in the References section where you will give a include a formal APA-formatted citation (see below).
-# Sign your acknowledgments section with your wiki signature.
+# You '''must''' also include this statement unless otherwise noted:
 ==== References ====

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 # Use the discussion/talk page to make a comment. Wiki etiquette requires that you sign your comments with your "signature": <nowiki>~~~~</nowiki> '''(4 tildes in a row)'''.  These tildes get converted automatically, for example, into: '' [[User:Kdahlquist|Kdahlquist]] ([[User talk:Kdahlquist|talk]]) 13:43, 13 August 2017 (PDT) ''
 #* You can fulfill this by posting your comment on [[User_Talk:KDahlquist|Dr. Dahlquist's]] user talk page.
-# Create a template for yourself and use it on your user page.  A template is a block of wiki text that you want to use over and over again on various pages.  Instead of having to either re-type that content or even copy-and-paste it multiple times, you can simply put the content on a special Template page.  You then use code to invoke the template on any other page in which you want that text to appear.  There are two steps to creating a Template.
+# Create a template for yourself and use it on your user page.  A template is a block of wiki text that you want to use over and over again on various pages.  Instead of having to either re-type that content or even copy-and-paste it multiple times, you can simply put the content on a special Template page.  You then use code to invoke the template on any other page in which you want that text to appear.  The advantage to using a Template is that when you make changes to the Template page, they will automatically appear on any other page on which the Template has been invoked. There are three steps to creating a Template.
-#* Create your template page like you would create any other new wiki page, but using the prefix ''Template:'' as part of the page name.  For example, your template should be called '''<nowiki>[[Template:username]]</nowiki>'''.
+## Create your template page like you would create any other new wiki page, but using the prefix ''Template:'' as part of the page name.  For example, your template should be called '''<nowiki>[[Template:username]]</nowiki>'''.
-#* Click on the link and put content on this page that you will want to use over and over again.  At the minimum, you should use it to create a set of navigation links that you will use in each week's journal entry.  Each week as part of your journal assignment, you will be asked to create a link to your user page, the assignment page, your individual journal entry page, and the shared journal page, as well as adding the category "Journal Entry" to your page.  If you put these links on your template and then invoke the template on your journal page, this will automatically be taken care of for you.  You may also wish to include any other links that you would find useful.
+## Click on the Template redlink you just created and put content on this page that you will want to use over and over again.
-#* Once you have added and saved the content to your Template page, you need to '''''use''''' your template on your user page.  To do so, invoke the template by using the following syntax:  '''<nowiki>{{Template:username}}</nowiki>''' in the place you wish the content of the template page to appear. This will "expand" the template to its full contents on the actual page.
+##* At the minimum, you should use it to create a set of navigation links that you will use in each week's journal entry.  Each week as part of your journal assignment, you will be asked to create a link to your '''user page''', '''the assignment page''', '''your individual journal entry page''', and '''the shared journal page''', as well as adding the '''category "Journal Entry"''' to your page.  You should put list of all these links (for all weeks of the semester) on your template and then invoke the template each week on your individual journal page. Then this part of the assignment will automatically be taken care of for you.  You may also wish to include any other links that you would find useful.
 === Academic Honesty ===

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 ## Upload your image file: Click [[Special:Upload|Upload file]] then follow the instructions to select and upload your file.  Note the name of the file and make sure to type something in the Summary field.
 ## Use the image on your page using the following syntax: '''<nowiki>[[Image:exact-name-of-image-file]]</nowiki>'''.  Don't forget that the filename will include a file extension.
-#* '''REMEMBER:  DO NOT SUBMIT COPYRIGHTED WORK WITHOUT PERMISSION!'''  We suggest you include an image of yourself that would be suitable for a professional resume.
+#* '''REMEMBER:  DO NOT SUBMIT COPYRIGHTED WORK WITHOUT PERMISSION!'''  #* We suggest you include an image of yourself that would be suitable for a professional resume.
 #* The wiki is used by many different users.  Make sure that your filename is unique to you.  "image.jpg" is a very generic filename that could be potentially used by many people. "Myname.jpg" will be unique to you.  Using a unique filename that identifies you as the author is important because files that are uploaded with the same name will overwrite each other.  This is a great feature when you are updating your own file, but it is a terrible feature if your file gets overwritten by someone else's file!
 #* For further information on how to format your image on the page, see the [https://www.mediawiki.org/wiki/Help:Images MediaWiki image help page].
@@ Line 95: / Line 95: @@
 ## Link to the file you uploaded on your Wiki page:  '''<nowiki>[[Media:exact-name-of-uploaded-file|visible label]]</nowiki>''' Don't forget that the filename will include a file extension.
 #* The wiki is used by many different users.  Make sure that your filename is unique to you.  "Resume.pdf" is a very generic filename that could be potentially used by many people. "Myname_resume.pdf" will be unique to you.  Using a unique filename that identifies you as the author is important because files that are uploaded with the same name will overwrite each other.  This is a great feature when you are updating your own file, but it is a terrible feature if your file gets overwritten by someone else's file!
-#* '''REMEMBER:  DO NOT SUBMIT COPYRIGHTED WORK WITHOUT PERMISSION!'''  We suggest that you include something professional, such as the Word or PDF version of your paper resume, a scientific paper you have written, etc.
+#* '''REMEMBER:  DO NOT SUBMIT COPYRIGHTED WORK WITHOUT PERMISSION!'''  #* We suggest that you include something professional, such as the Word or PDF version of your paper resume, a scientific paper you have written, etc.
 # Assign one or more categories to your page:  '''<nowiki>[[Category:category name]]</nowiki>''' This creates an automatic "table of contents" for the wiki.  When you click on a category link at the bottom of a page, a new page opens giving you a list of all wiki pages that have been assigned that category.
 #* Throughout the course, you will use the category '''<nowiki>[[Category:Journal Entry]]</nowiki>''' for all of your individual journal entry pages you create.  You will use the category '''<nowiki>[[Category:Shared]]</nowiki>''' for all of the shared journal entry pages you create.