Week 2 - Revision history

Kdahlquist: remove under construction banner

2019-09-05T18:16:52Z

remove under construction banner

Kdahlquist: /* Shared Journal Assignment */ update references

2019-09-05T18:13:19Z

‎Shared Journal Assignment: update references

Kdahlquist: /* Shared Journal Assignment */ paste in from week 2 from 2017

2019-09-05T18:08:39Z

‎Shared Journal Assignment: paste in from week 2 from 2017

Kdahlquist: /* Overview */ spelled out key concepts more

2019-09-05T18:03:24Z

‎Overview: spelled out key concepts more

Kdahlquist: /* Homework Partners */ assigned homework partners

2019-09-05T18:02:12Z

‎Homework Partners: assigned homework partners

Kdahlquist: /* Academic Honesty */ delete header

2019-09-05T17:27:32Z

‎Academic Honesty: delete header

Kdahlquist: /* References */ delete extra section

2019-09-05T17:25:57Z

‎References: delete extra section

Kdahlquist: /* Acknowledgments */ delete extra section

2019-09-05T17:25:39Z

‎Acknowledgments: delete extra section

Kdahlquist: /* References */ fix date on reference

2019-09-05T17:25:13Z

‎References: fix date on reference

Kdahlquist: /* References */ fix links

2019-09-05T17:24:01Z

‎References: fix links

← Older revision		Revision as of 18:16, 5 September 2019
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−	~~{{Under Construction}}~~
−
	'''This journal entry is due on Thursday, September 12, at 12:01am Pacific time.'''		'''This journal entry is due on Thursday, September 12, at 12:01am Pacific time.'''

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 * [http://www.ncbi.nlm.nih.gov/books/NBK21121/#A5818 Brown, T.A. (2002) ''Genomes 2'', Ch. 3.3.2: The link between the transcriptome and the proteome] (freely available on NCBI Bookshelf)
-* Nirenberg, M. (2004) Deciphering the Genetic Code&mdash;a Personal Account. ''Trends in Biochemical Sciences'' 29:  46-54. (on [https://brightspace.lmu.edu Brightspace])
+* [https://www.sciencedirect.com/science/article/pii/S0968000403003025 Nirenberg, M. (2004) Deciphering the Genetic Code&mdash;a Personal Account. ''Trends in Biochemical Sciences'' 29:  46-54. DOI: 10.1016/j.tibs.2003.11.009] (also on [https://brightspace.lmu.edu Brightspace])
-* Kaji, A., Kaji, H. (2004) The history of deciphering the genetic code: setting the record straight. ''Trends in Biochemical Sciences''  29:  293.
+* [https://www.cell.com/trends/biochemical-sciences/fulltext/S0968-0004(04)00083-0 Kaji, A., Kaji, H. (2004) The history of deciphering the genetic code: setting the record straight. ''Trends in Biochemical Sciences''  29:  293. DOI: 10.1016/j.tibs.2004.04.005] (also on [https://brightspace.lmu.edu Brightspace])
 * Moody, G. (2004) ''Digital Code of Life'', Chapter 1, Hoboken, New Jersey:  John Wiley & Sons, pp. 1-9. (on [https://brightspace.lmu.edu Brightspace])
 * Hayes, B. (2004) Ode to the Code, ''American Scientist'' 92: 494-498. (on [https://brightspace.lmu.edu Brightspace])

← Older revision		Revision as of 18:08, 5 September 2019
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	* Add the "Journal Entry" and "Shared" categories to the end of the wiki page (if someone has not already done so).		* Add the "Journal Entry" and "Shared" categories to the end of the wiki page (if someone has not already done so).

−	=== Read and Reflect ===	+	=== Read ===
		+
		+	* [http://www.ncbi.nlm.nih.gov/books/NBK21121/#A5818 Brown, T.A. (2002) ''Genomes 2'', Ch. 3.3.2: The link between the transcriptome and the proteome] (freely available on NCBI Bookshelf)
		+	* Nirenberg, M. (2004) Deciphering the Genetic Code—a Personal Account. ''Trends in Biochemical Sciences'' 29: 46-54. (on [https://brightspace.lmu.edu Brightspace])
		+	* Kaji, A., Kaji, H. (2004) The history of deciphering the genetic code: setting the record straight. ''Trends in Biochemical Sciences'' 29: 293.
		+	* Moody, G. (2004) ''Digital Code of Life'', Chapter 1, Hoboken, New Jersey: John Wiley & Sons, pp. 1-9. (on [https://brightspace.lmu.edu Brightspace])
		+	* Hayes, B. (2004) Ode to the Code, ''American Scientist'' 92: 494-498. (on [https://brightspace.lmu.edu Brightspace])
		+
		+	=== Reflect ===
		+
		+	# What is the biggest discovery that I made from these readings?
		+	# What part of the readings did I understand the least?
		+	# What is the relationship between the genetic code and a computer code?
		+
		+	[[Category:Assignment]]

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 The purpose of this assignment is:
 # To understand the nature of models and modeling and connect this with the process of science.
-# To review key concepts in the central dogma of  molecular biology and evolution.
+# To review key concepts in genetics, biochemistry, evolution, and the central ''model'' of  molecular biology.
 # To learn the skills needed to create and maintain a high quality electronic laboratory notebook.

@@ Line 21: / Line 21: @@
 === Homework Partners ===
-You will work in groups of two or three for this week's assignment.  Please sit next to your partner in class.  You will be expected to consult with your partner, in order to complete the assignment.  However, unless otherwise stated, each partner must submit his or her own work as the individual journal entry (direct copies of each other's work is not allowed).  Homework partners for this week are:
+You will work in groups of two for this week's assignment.  Please sit next to your partner in class.  You will be expected to consult with your partner, in order to complete the assignment.  However, unless otherwise stated, each partner must submit his or her own work as the individual journal entry (direct copies of each other's work is not allowed).  Homework partners for this week are:
-* (Genetics)
+* Marcus & Emma (Genetics)
-* (Biochemistry)
+* Michael & Kaitlyn (Biochemistry)
-* (Molecular Biology)
+* Jonar & Aby (Molecular Biology)
-* (Evolution)
+* Iliana & Naomi (Evolution)
 === Background ===

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 * References to data and files should be made within the methods and results section of your notebook, listed above.
 * In addition to these inline links, create a "Data and Files" section of your notebook to make a list of the files generated in this exercise.
 ==== Acknowledgments ====

@@ Line 125: / Line 125: @@
 * The references should be formatted according to the [https://owl.purdue.edu/owl/research_and_citation/using_research/documents/20180719CitationChart.pdf APA guidelines].
 * For more detailed guidelines, please see the document [[Media:BIOL367_Fall2019_GuidelinesforLiteratureCitations.pdf | Guidelines for Literature Citations in a Scientific Paper]] that you were given on the first day of class.
-* Cite the appropriate weekly Assignment page.  For example, the citation for the [[Week 1]] Assignment page is: LMU BioDB 2019. (2019). Week 1. Retrieved August 29, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_1
+* Cite the appropriate weekly Assignment page.  For example, the citation for the [[Week 1]] Assignment page is: LMU BioDB 2019. (2019). Week 1. Retrieved August 27, 2019, from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_1
 * Even if you have nothing else to cite, the References section must be present and include the citation to the appropriate weekly assignment page.

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 ** documents, including the scientific literature
 * The references in this section should be accompanied by ''in text citations'' on your page that refer to these references.
-* The references should be formatted according to the [http://libguides.lmu.edu/c.php?g=324079&p=2174128 APA guidelines].
+* The references should be formatted according to the [https://owl.purdue.edu/owl/research_and_citation/apa_style/apa_formatting_and_style_guide/reference_list_basic_rules.html APA Style for References].
-* For more detailed guidelines, please see the document [[Media:BIOL368_Fall2016_GuidelinesforLiteratureCitations.pdf | Guidelines for Literature Citations in a Scientific Paper]] that you were given on the first day of class.
+* For more detailed guidelines, please see the document [[Media:BIOL367_Fall2019_GuidelinesforLiteratureCitations.pdf | Guidelines for Literature Citations in a Scientific Paper]] that you were given on the first day of class.
 === Academic Honesty ===