Week 5 Individual Journal - Revision history

Jnimmers: Finished General data info formatting

2019-09-27T22:34:50Z

Finished General data info formatting

Jnimmers: Formating

2019-09-27T22:29:31Z

Formating

Jnimmers: Sci quality of database update

2019-09-27T22:28:31Z

Sci quality of database update

Jnimmers: Answer sci qualiity questions

2019-09-27T21:32:55Z

Answer sci qualiity questions

Jnimmers: Edit record number

2019-09-27T21:19:28Z

Edit record number

Jnimmers: Formatting

2019-09-27T21:09:09Z

Formatting

Jnimmers: Capitalization

2019-09-27T20:52:58Z

Capitalization

Jnimmers: Capitalization

2019-09-27T20:52:41Z

Capitalization

Jnimmers: Capitalization

2019-09-27T20:52:32Z

Capitalization

Jnimmers: Capitalization

2019-09-27T20:52:13Z

Capitalization

@@ Line 9: / Line 9: @@
 #*We are utilizing the [http://www.crisprlnc.org CRISPRInc] Databse
 # What type (or types) of database is it?
-#*CRISPR is a database of  validated CRISPR/Cas9 sgRNAs "single guide RNA" for lncRNAs of model organisms "long non-coding RNA". From: Introduction to the 2019 ''NAR'' Database Issue: [https://academic.oup.com/nar/article/47/D1/D1/5280358 Rigden, D. J. & Fernández-Suárez, X. M. (2019). The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection. Nucleic acids research, 47(D1): D1–D7. doi:10.1093/nar/gky1267]
+#*CRISPR is a database of  validated CRISPR/Cas9 sgRNAs "single guide RNA" for lncRNAs of model organisms "long non-coding RNA". From: Introduction to the 2019 ''NAR'' Database Issue: [https://academic.oup.com/nar/article/47/D1/D1/5280358 Rigden, D. J. & Fernández-Suárez, X. M. (2019). The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection. Nucleic acids research, 47(D1): D1–D7. doi:10.1093/nar/gky1267] [https://academic.oup.com/nar/article/47/D1/D1/5280358]
 # What biological information (type of data) does it contain? (sequence, structure, model organism, or specialty [what?])
-#*CRISPRlnc contains validated sgRNAs for model organisms lncRNAs.[http://www.crisprlnc.org]
+#*CRISPRlnc contains validated sgRNAs sequences and descriptions for model organisms lncRNAs.[http://www.crisprlnc.org]
 # What type of data source does it have?
 #*CRISPlnc utilizes specific literature information from PubMed, NCBI and Ensemble.
 # Primary versus secondary ("meta")?
 #*CRISRlnc is a secondary source database. [http://www.crisprlnc.org]
@@ Line 20: / Line 19: @@
 #*This database is manually curated. [http://www.crisprlnc.org]
 # if curated, is it electronic versus human curation?
-#*Human curation
+#*Human curation [http://www.crisprlnc.org/]
 # if human curation, is it in-house staff versus community curation?
-#*In-house curation.
+#*In-house curation. [http://www.crisprlnc.org/]
 # What individual or organization maintains the database?
-#*CRISPRlnc is maintained by Bioinformatics Group of XTBG
+#*CRISPRlnc is maintained by Bioinformatics Group of XTBG [http://www.crisprlnc.org/]
 # public versus private
 #*this database is public [http://www.crisprlnc.org]

@@ Line 11: / Line 11: @@
 #*CRISPR is a database of  validated CRISPR/Cas9 sgRNAs "single guide RNA" for lncRNAs of model organisms "long non-coding RNA". From: Introduction to the 2019 ''NAR'' Database Issue: [https://academic.oup.com/nar/article/47/D1/D1/5280358 Rigden, D. J. & Fernández-Suárez, X. M. (2019). The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection. Nucleic acids research, 47(D1): D1–D7. doi:10.1093/nar/gky1267]
 # What biological information (type of data) does it contain? (sequence, structure, model organism, or specialty [what?])
-#*CRISPRlnc contains validated sgRNAs for model organisms lncRNAs.[[http://www.crisprlnc.org]]
+#*CRISPRlnc contains validated sgRNAs for model organisms lncRNAs.[http://www.crisprlnc.org]
 # What type of data source does it have?
 #*CRISPlnc utilizes specific literature information from PubMed, NCBI and Ensemble.
 # Primary versus secondary ("meta")?
-#*CRISRlnc is a secondary source database. [[http://www.crisprlnc.org]]
+#*CRISRlnc is a secondary source database. [http://www.crisprlnc.org]
 # curated versus non-curated?
-#*This database is manually curated. [[http://www.crisprlnc.org]]
+#*This database is manually curated. [http://www.crisprlnc.org]
 # if curated, is it electronic versus human curation?
 #*Human curation
@@ Line 26: / Line 26: @@
 #*CRISPRlnc is maintained by Bioinformatics Group of XTBG
 # public versus private
-#*this database is public [[http://www.crisprlnc.org]]
+#*this database is public [http://www.crisprlnc.org]
 # large national or multinational entity or small lab group
-#*CRISPR is based in the Bioinformatics group of the Xishuangbanna Tropical Botanical Garden, of the Chinese Academy of Sciences. However, the tool created through this lab has gained international renown. [[http://www.crisprlnc.org]]
+#*CRISPR is based in the Bioinformatics group of the Xishuangbanna Tropical Botanical Garden, of the Chinese Academy of Sciences. However, the tool created through this lab has gained international renown. [http://www.crisprlnc.org]
 # What is their funding source(s)?
-#*CRISPR is funded by The National Natural Science Foundation of China, Yunnan Province, The Scientific Research Fund of Hunan Provincial Education Department and The Cooperative Innovation Center of Engineering and New Products for Developmental Biology of Hunan Province[[https://academic.oup.com/nar/article/47/D1/D1/5280358]]
+#*CRISPR is funded by The National Natural Science Foundation of China, Yunnan Province, The Scientific Research Fund of Hunan Provincial Education Department and The Cooperative Innovation Center of Engineering and New Products for Developmental Biology of Hunan Province[https://academic.oup.com/nar/article/47/D1/D1/5280358]
 ===Scientific Quality of the Database===

@@ Line 39: / Line 39: @@
 #** 7
 # What species are covered in the database? (If it is a ''very'' long list, summarize.)
-#* ''Homo sapiens''(Humans), ''Mus musculus(Mouse)'',  ''Drosophila melanogaster'' (Fly), ''Rattus norvegicus''(Brown Rat), ''Oryctolagus cuniculus'' (European Rabbit), Sus scrofa ''Wild Boar'', ''danio rerio'' Zebrafish, and ''solanum lycopersicum'' (Tomatoes)
+#* This database covers:''Homo sapiens''(Humans), ''Mus musculus'' (Mouse),  ''Drosophila melanogaster'' (Fly), ''Rattus norvegicus'' (Brown Rat), ''Oryctolagus cuniculus'' (European Rabbit), ''Sus scrofa'' (Wild Boar), ''danio rerio'' (Zebrafish), and ''solanum lycopersicum'' (Tomatoes)
 # Is the database content useful? I.e., what biological questions can it be used to answer?
 # Is the database content timely?
-*#* Is there a need in the scientific community for such a database at this time?
+# Is there a need in the scientific community for such a database at this time?
-*#* Is the content covered by other databases already?
+#* Is the content covered by other databases already?
-*# How ''current'' is the database?
+# How ''current'' is the database?
-*#* When did the database first go online?
+#* When did the database first go online?
-*#* How often is the database updated?
+#** May 18th, 2018
-*#* When was the last update?
+# How often is the database updated?
 ===General Utility of the Database to the Scientific Community===

@@ Line 37: / Line 37: @@
 #** The database contains  2089 records of collected sgRNA data.
 #* What claims do the database owners make about coverage in the corresponding paper?
-#**
+#** 7
-*# What species are covered in the database? (If it is a ''very'' long list, summarize.)
+# What species are covered in the database? (If it is a ''very'' long list, summarize.)
-*# Is the database content useful? I.e., what biological questions can it be used to answer?
+#* ''Homo sapiens''(Humans), ''Mus musculus(Mouse)'',  ''Drosophila melanogaster'' (Fly), ''Rattus norvegicus''(Brown Rat), ''Oryctolagus cuniculus'' (European Rabbit), Sus scrofa ''Wild Boar'', ''danio rerio'' Zebrafish, and ''solanum lycopersicum'' (Tomatoes)
-*# Is the database content timely?
+# Is the database content useful? I.e., what biological questions can it be used to answer?
 *#* Is there a need in the scientific community for such a database at this time?
 *#* Is the content covered by other databases already?

@@ Line 35: / Line 35: @@
 # Does the content appear to completely cover its content domain?
 #* How many records does the database contain?
-#** 7
+#** The database contains  2089 records of collected sgRNA data.
 #* What claims do the database owners make about coverage in the corresponding paper?
-#** 7
+#**
 *# What species are covered in the database? (If it is a ''very'' long list, summarize.)
 *# Is the database content useful? I.e., what biological questions can it be used to answer?

@@ Line 5: / Line 5: @@
 Read the article about the database from the ''Nucleic Acids Research'' journal and then go online to the database itself.  In keeping with Academic Honesty and citation practices, when you answer the questions below, provide a hyperlink to the page that you got the information from.  There should be at least one hyperlink per answer.
-===General information about the database===
+===General Information About the Database===
 # What is the name of the database? (link to the home page)
 #*We are utilizing the [http://www.crisprlnc.org CRISPRInc] Databse
@@ Line 30: / Line 30: @@
 #*CRISPR is based in the Bioinformatics group of the Xishuangbanna Tropical Botanical Garden, of the Chinese Academy of Sciences. However, the tool created through this lab has gained international renown. [[http://www.crisprlnc.org]]
 # What is their funding source(s)?
 #*CRISPR is funded by The National Natural Science Foundation of China, Yunnan Province, The Scientific Research Fund of Hunan Provincial Education Department and The Cooperative Innovation Center of Engineering and New Products for Developmental Biology of Hunan Province[[https://academic.oup.com/nar/article/47/D1/D1/5280358]]
 ===Scientific Quality of the Database===
 *# Does the content appear to completely cover its content domain?

@@ Line 59: / Line 59: @@
 *# Access:  Is there a license agreement or any restrictions on access to the database?
-===Summary judgment===
+===Summary Judgment===
 *# Would you direct a colleague unfamiliar with the field to use it?
 *# Is this a professional or "hobby" database?  The "hobby" analogy means that it was that person's hobby to make the database. It could mean that it is limited in scope, done by one or a few persons, and seems amateur.

@@ Line 45: / Line 45: @@
 *#* When was the last update?
-==='General utility of the database to the scientific community===
+===General Utility of the Database to the Scientific Community===
 *# Are there links to other databases?  Which ones?
 *# Is it convenient to browse the data?
@@ Line 57: / Line 57: @@
 *#* Are the search options sensible?
 *#* Run a sample query.  Do the results make sense?
 *# Access:  Is there a license agreement or any restrictions on access to the database?
 ===Summary judgment===
 *# Would you direct a colleague unfamiliar with the field to use it?