Difference between revisions of "Knguye66 Week 7"
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| − | == | + | == Microrray Data Analysis (wild type data) == |
=== Background === | === Background === | ||
==== Part 1: Statistical Analysis Part 1 ==== | ==== Part 1: Statistical Analysis Part 1 ==== | ||
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| + | ==== Bonferroni and p value Correction ==== | ||
| + | |||
| + | ==== Benjamini & Hochberg p value Correction ==== | ||
| + | |||
| + | ==== Sanity Check ==== | ||
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| + | * The number of genes that are significantly changed at p value cut-off of p < 0.05 | ||
| + | ** How many genes have p < 0.05? and what is the percentage (out of 6189)? | ||
| + | ** How many genes have p < 0.01? and what is the percentage (out of 6189)? | ||
| + | ** How many genes have p < 0.001? and what is the percentage (out of 6189)? | ||
| + | ** How many genes have p < 0.0001? and what is the percentage (out of 6189)? | ||
| + | |||
| + | * How many genes are p < 0.05 for the Bonferroni-corrected p value? and what is the percentage (out of 6189)? | ||
| + | * How many genes are p < 0.05 for the Benjamini and Hochberg-corrected p value? and what is the percentage (out of 6189)? | ||
Revision as of 14:09, 15 October 2019
Contents
Microrray Data Analysis (wild type data)
Background
Part 1: Statistical Analysis Part 1
Bonferroni and p value Correction
Benjamini & Hochberg p value Correction
Sanity Check
- The number of genes that are significantly changed at p value cut-off of p < 0.05
- How many genes have p < 0.05? and what is the percentage (out of 6189)?
- How many genes have p < 0.01? and what is the percentage (out of 6189)?
- How many genes have p < 0.001? and what is the percentage (out of 6189)?
- How many genes have p < 0.0001? and what is the percentage (out of 6189)?
- How many genes are p < 0.05 for the Bonferroni-corrected p value? and what is the percentage (out of 6189)?
- How many genes are p < 0.05 for the Benjamini and Hochberg-corrected p value? and what is the percentage (out of 6189)?
