Knguye66 Eyoung20 Week 12/13

Combined Individual Journals for Kaitlyn Nguyen and Emma Young (Data Analysts).

Purpose

The purpose of this assignment is to record our progress towards the FunGals deliverables as the Data Analysts for this week and the future weeks to come.

Methods and Results: Progress

Progress 11/21/19

• Our group decided to have the ANOVA, sanity check, and STEM set-up done before class on Thursday, 11/21/19
• First created a worksheet and labeled accordingly based on the format the Coder's Guild decided
• Finished the steps on Week 8 for Statistical Analysis Part I: ANOVA on Microsoft Excel for the new MicroArray Data found on the Data Analysis page
  • For questions asked on the p-value (use: "out of 4468" genes instead of "out of 6189" to adjust for this data)
• Following the ANOVA: Part I, Bonferroni, Benjamini & Hochberg, and p-value correction, a quick sanity check was performed for the p-value dataset.

Sanity Check Questions:

-Unadjusted p-value-

1. How many genes have p<0.05? and what is the percentage (out of 4468)?
   • 1196
2. How many genes have p<0.01? and what is the percentage (out of 4468)?
   • 731
3. How any genes have p<0.001? and what is the percentage (out of 4468)?
   • 380
4. How many genes have p<0.0001? and what is the percentage (out of 4468)?
   • 190

-Bonferroni & Benjamini and Hochberg p-value-

1. How many genes are p<0.05 for the Bonferroni-corrected p-value? and what is the percentage (out of 4468)?
   • 103, 2.3%
2. How many genes are p <0.05 for the Benjamini and Hochberg-corrected p-value? and what is the percentage (out of 4468)?
   • 677, 15.2%

Conclusion

The first stage of our group's project was completed via referencing Week 8 and using Microsoft Excel to complete the tasks. The excel file will be located in the FunGals page for viewing and download.

Acknowledgements

This section is in acknowledgement to partner Kaitlyn Nguyen (User:knguye66), Michael Armas (User:Marmas), as well as, Iliana Crespin (User:Icrespin), and Emma Young (User:eyoung20). We would also like to acknowledge Dr. Dahlquist (User:KDahlquist) for introducing and teaching the topic and direction of this assignment.

"Except for what is noted above, this individual journal entry was completed by me and not copied from another source."

References

• Dahlquist, K. (2019, November 19). Data Analysis. In Wikipedia, Biological Databases. Retrieved 6:25, November 20, 2019, from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Data_Analysis
• Dahlquist, K. (2019, November 20). Final Project Deliverables. In Wikipedia, Biological Databases. Retrieved 6:25, November 20, 2019, from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_12/13https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Final_Project_Deliverables
• Dahlquist, K. (2019, November 19). Week 12/13. In Wikipedia, Biological Databases. Retrieved 6:25, November 20, 2019, from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_12/13
• Dahlquist, K. (2019, October 17). Week 8. In Wikipedia, Biological Databases. Retrieved 6:30, October 21, 2019, from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_8