Difference between revisions of "Cdomin12 and Ntesfaio Week 3"
(→Standard name, systematic name, and name description for your gene (from SGD)?: Added the standard name and systematic name) |
(→Gene ID (identifier) for your gene in all four databases (SGD, NCBI Gene, Ensembl, UniProt)?: Added gene ID) |
||
| Line 18: | Line 18: | ||
===Gene ID (identifier) for your gene in all four databases (SGD, NCBI Gene, Ensembl, UniProt)?=== | ===Gene ID (identifier) for your gene in all four databases (SGD, NCBI Gene, Ensembl, UniProt)?=== | ||
| − | + | Gene ID in SGD: S000006074 | |
| + | |||
| + | Gene ID in NCBI: S000006074 | ||
| + | |||
| + | Gene ID in Ensembl: S000006074 | ||
| + | |||
| + | Gene ID in UniProt: S000006074 | ||
| + | |||
| + | All 4 databases use the same Gene ID | ||
===DNA sequence of your gene?=== | ===DNA sequence of your gene?=== | ||
Revision as of 19:08, 16 September 2019
Contents
- 1 My Favorite Gene
- 1.1 Summary of RAD53/ YPL153C:
- 1.2 Standard name, systematic name, and name description for your gene (from SGD)?
- 1.3 Gene ID (identifier) for your gene in all four databases (SGD, NCBI Gene, Ensembl, UniProt)?
- 1.4 DNA sequence of your gene?
- 1.5 Protein sequence corresponding to your gene?
- 1.6 Function of your gene?
- 1.7 What was different about the information provided about your gene in each of the parent databases?
- 1.8 Were there differences in content, the information or data itself?
- 1.9 Were there differences in presentation of the information?
- 1.10 Why did you choose your particular gene? i.e., why is it interesting to you and your partner?
- 1.11 Acknowledgments
- 1.12 References
My Favorite Gene
Summary of RAD53/ YPL153C:
The summary should be one paragraph about the function of your gene based on what you have read in each of the four databases. This is one paragraph that synthesizes information, not one paragraph per database.
Standard name, systematic name, and name description for your gene (from SGD)?
Standard Name: Rad53
Systematic Name: YPL153C
Name Description: RADiation sensitive
It is a DNA damage response kinase and plays a role in the initiation of DNA replication
Gene ID (identifier) for your gene in all four databases (SGD, NCBI Gene, Ensembl, UniProt)?
Gene ID in SGD: S000006074
Gene ID in NCBI: S000006074
Gene ID in Ensembl: S000006074
Gene ID in UniProt: S000006074
All 4 databases use the same Gene ID
DNA sequence of your gene?
Protein sequence corresponding to your gene?
Go to the ExPASy tool and translate the DNA sequence of your gene. Which reading frame encodes the protein sequence? Take a screenshot of your results, display it on your wiki page, and state which frame it is.
Function of your gene?
What was different about the information provided about your gene in each of the parent databases?
Were there differences in content, the information or data itself?
Were there differences in presentation of the information?
Why did you choose your particular gene? i.e., why is it interesting to you and your partner?
Include an image related to your gene (be careful that you do not violate any copyright restrictions!) Please make the image something scientific (not like the random images seen on the SGD blog posts). If a 3D structure of the protein your gene encodes is available, you can choose to embed a rotating image of the structure on your page using the FirstGlance in Jmol software. This is optional, a different static image would be OK, too.
Acknowledgments
Both partners should sign the Academic Honesty statement with their wiki signatures. You need to cite the specific database page from which you derived your information for each of the questions. When answering the free-form questions, be sure to paraphrase.
"Except for what is noted above, this individual journal entry was completed by me and not copied from another source."
Ntesfaio (talk) 16:34, 16 September 2019 (PDT)
