Difference between revisions of "Ymesfin Week 8"
Jump to navigation
Jump to search
(added hap4 microarray data) |
(added week 7 material) |
||
| Line 1: | Line 1: | ||
[[Media: HW_ymesfin_BIOL367_F19_microarray-data_dHAP4(7893).zip | dHAP4 Microarray Data]] | [[Media: HW_ymesfin_BIOL367_F19_microarray-data_dHAP4(7893).zip | dHAP4 Microarray Data]] | ||
| + | |||
| + | ==Purpose== | ||
| + | The purpose of this assignment was to create a detailed electronic lab notebook that analyzes a DNA microarray dataset and to demonstrate our understanding of p-value cut-offs. | ||
| + | |||
| + | [[Week 7| Week 7 Assignment]] | ||
| + | |||
| + | [[Week 8| Week 8 Assignment]] | ||
| + | |||
| + | ==Methods== | ||
| + | #The data was first downloaded from the wiki | ||
| + | #*The strain we will be analyzing is Delta-Hap4 | ||
| + | #*The data was obtained from the following file: [[Media: Ymesfin_BIOL367_F19_microarray-data_dHAP4(7846).xlsx| Ymesfin_BIOL367_F19_microarray-data_dHAP4(7846).xlsx]] | ||
| + | #*The file had timepoints at 15, 30, 60, 90, and 120 minutes. All the timepoints had 4 replicates but the 90 and 120 minute timepoints had 3 replicates. There were a total of 6189 samples in this dataset. | ||
| + | |||
| + | ==Results== | ||
| + | |||
| + | [[User:Ymesfin| Ymesfin]] | ||
| + | |||
| + | {{Template: ymesfin}} | ||
| + | |||
| + | ==Acknowledgements== | ||
| + | Dr. Kam Dahlquist; Professor | ||
| + | |||
| + | Naomi Tesfaiohannes; Homework Partner | ||
| + | |||
| + | David Ramirez; Homework Partner | ||
| + | |||
| + | Except for what is noted above, this individual journal entry was completed by me and not copied from another source. | ||
| + | |||
| + | [[User:Ymesfin|Ymesfin]] ([[User talk:Ymesfin|talk]]) 00:26, 16 October 2019 (PDT) | ||
| + | |||
| + | ==References== | ||
| + | LMU BioDB 2019. (2019). Week 7. Retrieved October 16, 2019, from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_7 | ||
Revision as of 19:25, 21 October 2019
Purpose
The purpose of this assignment was to create a detailed electronic lab notebook that analyzes a DNA microarray dataset and to demonstrate our understanding of p-value cut-offs.
Methods
- The data was first downloaded from the wiki
- The strain we will be analyzing is Delta-Hap4
- The data was obtained from the following file: Ymesfin_BIOL367_F19_microarray-data_dHAP4(7846).xlsx
- The file had timepoints at 15, 30, 60, 90, and 120 minutes. All the timepoints had 4 replicates but the 90 and 120 minute timepoints had 3 replicates. There were a total of 6189 samples in this dataset.
Results
Acknowledgements
Dr. Kam Dahlquist; Professor
Naomi Tesfaiohannes; Homework Partner
David Ramirez; Homework Partner
Except for what is noted above, this individual journal entry was completed by me and not copied from another source.
Ymesfin (talk) 00:26, 16 October 2019 (PDT)
References
LMU BioDB 2019. (2019). Week 7. Retrieved October 16, 2019, from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_7
