Difference between revisions of "Jcowan4 Journal Week 10"
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==Methods== | ==Methods== | ||
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| + | ==== Creating the GRNmap Input Workbook ==== | ||
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| + | Now that you have identified the gene regulatory network that you want to model, the next step is to generate the input Excel workbook that you will run in the GRNmap modeling software. | ||
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| + | [https://github.com/kdahlquist/DahlquistLab/raw/master/data/Spring2019/15-genes_28-edges_sample_Sigmoid_estimation_2019.xlsx Click here to download a sample workbook] on which to base the one specific to your network and microarray data. | ||
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| + | Note that when following the instructions below, you need to follow them precisely, to the letter, or GRNmap will return an error. | ||
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==Results== | ==Results== | ||
==Data and Files== | ==Data and Files== | ||
Revision as of 17:10, 6 November 2019
Contents
Purpose
The purpose was to build experience with database queries and making models. This was done to prepare us for our final assignment.
Methods
Creating the GRNmap Input Workbook
Now that you have identified the gene regulatory network that you want to model, the next step is to generate the input Excel workbook that you will run in the GRNmap modeling software.
Click here to download a sample workbook on which to base the one specific to your network and microarray data.
Note that when following the instructions below, you need to follow them precisely, to the letter, or GRNmap will return an error.
Results
Data and Files
Conclusion
References
- Gene Ontology Resource. (2019). Retrieved October 30, 2019, from http://geneontology.org/.
- Yeastract+. (2019). Retrieved October 30, 2019, from http://www.yeastract.com/formregmatrix.php.
- GRNsight Home. (2019). Retrieved October 30, 2019, from https://dondi.github.io/GRNsight/.
- LMU BioDB 2019. (2019). Week 9. Retrieved October 30, 2019, from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_9.
