Ymesfin Week 7

Purpose

The purpose of this assignment was to create a detailed electronic lab notebook that analyzes a DNA microarray dataset and to demonstrate our understanding of p-value cut-offs.

Week 7 Assignment

Ymesfin

Main Page

Ymesfin

Week 1

Week 2

Week 3

Week 4

Week 5

Week 6

Week 7

Week 8

Week 9

Week 10

Week 11

Skinny Genes

Week 12

Week 13

Week 14

Week 15

Methods

1. The data was first downloaded from the wiki
   • The strain we will be analyzing is Delta-Hap4
   • The data was obtained from the following file: Ymesfin_BIOL367_F19_microarray-data_dHAP4(7846).xlsx
   • The file had timepoints at 15, 30, 60, 90, and 120 minutes. All the timepoints had 4 replicates but the 90 and 120 minute timepoints had 3 replicates. There were a total of 6189 samples in this dataset.

Acknowledgements

Dr. Kam Dahlquist; Professor

Naomi Tesfaiohannes; Homework Partner

David Ramirez; Homework Partner

Except for what is noted above, this individual journal entry was completed by me and not copied from another source.

Ymesfin (talk) 00:26, 16 October 2019 (PDT)

References

LMU BioDB 2019. (2019). Week 7. Retrieved October 16, 2019, from https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Week_7