Ntesfaio Week 10
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Contents
- 1 Individual Journal Assignment
- 2 Purpose
- 3 Methods
- 3.1 Creating a GRNmap Input Workbook
- 3.2 production_rates sheet
- 3.3 degradation_rates sheet
- 3.4 Expression Data Sheets for Individual Yeast Strains
- 3.5 network sheet
- 3.6 network_weights sheet
- 3.7 optimization_parameters sheet
- 3.8 threshold_b sheet
- 3.9 Dynamical Systems Modeling of your Gene Regulatory Network
- 4 Conclusion
- 5 Acknowledgments
- 6 References
- 7 Data and Files
Individual Journal Assignment
Purpose
The purpose of this week's assignment was to create a GRNmap with different sheets that go over the gene that was isolated from STEM profile. We also used GRNsight to visualize the results.
Methods
Creating a GRNmap Input Workbook
production_rates sheet
degradation_rates sheet
Expression Data Sheets for Individual Yeast Strains
network sheet
network_weights sheet
optimization_parameters sheet
threshold_b sheet
Dynamical Systems Modeling of your Gene Regulatory Network
Conclusion
Acknowledgments
My homework partners this week are Aby User:Ymesfin and David User:Dramir36. We worked together on running the different databases such as GRNmap and YEASTRACT.
