Asandle1 Week 15 - Revision history

Asandle1: updating info for questions

2024-05-03T00:48:39Z

updating info for questions

Asandle1: /* Answers to Questions */ edited formatting

2024-05-03T00:43:13Z

‎Answers to Questions: edited formatting

Asandle1: /* April 25 Notes */ answered questions

2024-05-03T00:42:59Z

‎April 25 Notes: answered questions

Asandle1: added answers to final questions

2024-05-03T00:42:11Z

added answers to final questions

Msymond1: /* April 25 Notes */

2024-05-02T17:30:46Z

‎April 25 Notes

Asandle1: /* April 25 Notes */ filed

2024-05-02T06:26:13Z

‎April 25 Notes: filed

Asandle1: /* April 25 Notes */ Yeast Beasts presentation

2024-05-02T06:25:42Z

‎April 25 Notes: Yeast Beasts presentation

Asandle1: /* April 25 Notes */ added genes

2024-04-25T21:55:42Z

‎April 25 Notes: added genes

Asandle1: /* April 25 Notes */ presentation note

2024-04-25T21:04:37Z

‎April 25 Notes: presentation note

Asandle1: week 15 created with week 14, also added a small notes section for April 25th

2024-04-25T20:59:08Z

week 15 created with week 14, also added a small notes section for April 25th

New page

{{Template:Asandle1}}

== Electronic Lab Notebook ==
'''This Journal is combination between week 14 and 15.
To get to the Team Journal Page please click here: [[Yeast Beasts]]
To get to the Previous Journal click here: [[Asandle1 Week 13]]

===In Class Thursday April 18th Notes===

*Dean immediately told me he needed help getting the text for the degradation imported
*I told him I knew how to fix it and he just needed to import the text to excel instead of copy pasting. Dr. Dahlquist helped him with that.
* we solved the issue of the #REF and Blanks, we didn't end up needing those two columns so we just deleted them
* Dean shared into the box up to the additional steps he took.
* Everything is into the file and we are having the other group look over what we did.
* We are now thinking about what to put down for metadata, I asked what we need for metadata and Dr. Dahlquist is explaining to us what metadata is and what to put in for it.
* Added a sheet and named it Metadata
* Added a Primary Key, Description, Data Source, Date Accessed, Data Updated Date, and Publication (Pubmed ID) or DOI Column
* Entered the info under each of these sections, and shared a screenshot with Dean to make sure we don't do the same work twice
----

===April 21 Notes===
* Trying to get in touch with to see where he left off so I know where to progress for next steps

===April 22 Notes===
* Dean looks to have created 4 of the tables but I need to speak with him in person to make corrections
* Created the metadata table
* Added detailed descriptions for table items
* Access File is on Box in each iteration, uploaded most recent version to box.

===April 23 Notes===
#Issue with Degradation rates and production rates on access going to 0's and 1's.
# I told Dean to ignore this issue and I will Deal with it while he deals with the expression table.
# Dr. Dahlquist tried reimporting and it works, so I am going to import both Degradation_Rates and Production_Rates again.
# I tried importing and had no issues
# Fixed the issues and everything worked fine
# Dean is working on the Expression_Table right now while I was fixing these. He encountered some issues for the Data team to solve.
# Dean said there is an error in the Network table. He said he can't make something a primary key because of a null value. I told him thats an excel importing issue, and we need to fix it in excel. I told Dean I will deal with it because he is not understanding the issue.
# I connected all of the relationships for the primary keys. Meta data remains unconnected since it is a separate piece.

===April 25 Notes===

==References & Acknowledgements==
===Acknowlegements===
* Dean and I communicated about the project via text, at one point I didn't hear from him so I called him and he promptly got back to me.
* Dr. Dahlquist helped us solve some issues with the data in the production_rates and degradation_rates tables. She also provided assistance with the expression table.

===References===
#LMU BioDB 2024. (2024). Coder/Designer. Retrieved April 17, 2024, from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Coder/Designer
#Community Central Fandom. (2024). Forum:How do I link to a heading on another page?. Retrieved April 17, 2024, from https://community.fandom.com/wiki/Forum:How_do_I_link_to_a_heading_on_another_page%3F

Used week 13 as an outline
Except for what is noted above, this individual journal entry was completed by me and not copied from another source. [[User:Asandle1|Asandle1]] ([[User talk:Asandle1|talk]])

[[Category: Team Project]]

@@ Line 52: / Line 52: @@
 . What didn't work?
-Nothing didn’t “work” this week.
+The class website did not work.
 . What will I do next to fix what didn't work?
-Nothing didn't work at this point.
+I don't have a fix but it meant that I took notes and did not have them save, so I lost some of my detailed notes on the methods for the past week. I am trying to determine what I would have saved them as.
 ==References & Acknowledgements==

@@ Line 51: / Line 51: @@
 . What didn't work?
 Nothing didn’t “work” this week.
 . What will I do next to fix what didn't work?
 Nothing didn't work at this point.

@@ Line 45: / Line 45: @@
 [https://docs.google.com/presentation/d/1DnYfkl9j5hy6EqTc1XT0tT7A_husJCJNNgsxhncsozY/edit?usp=sharing|presentation]
 . What worked?
@@ Line 51: / Line 52: @@
 . What didn't work?
 Nothing didn’t “work” this week.
 . What will I do next to fix what didn't work?
 Nothing didn't work at this point.

← Older revision		Revision as of 00:42, 3 May 2024
Line 44:		Line 44:

	[https://docs.google.com/presentation/d/1DnYfkl9j5hy6EqTc1XT0tT7A_husJCJNNgsxhncsozY/edit?usp=sharing\|presentation]		[https://docs.google.com/presentation/d/1DnYfkl9j5hy6EqTc1XT0tT7A_husJCJNNgsxhncsozY/edit?usp=sharing\|presentation]
		+
		+	1. What worked?
		+
		+	Everything, “worked” but we noticed we could save time by adding the gene name and systematic name both on the gene table.
		+
		+	2. What didn't work?
		+	Nothing didn’t “work” this week.
		+	3. What will I do next to fix what didn't work?
		+	Nothing didn't work at this point.

	==References & Acknowledgements==		==References & Acknowledgements==

@@ Line 43: / Line 43: @@
 Got the Gene list for profile 41 from the Data Analyst Team which are: Rpn4, Gcn4, Pdr1, Xbp1, Met28, Mga2, Spt23, Bas1, Yap1, Sok2, Msn2, Crz1, Rlm1, Fhl1, Pdr3, Cbf1, Rph1, Met31, Stp1, Msn4, Tec1, Rgm1, Stp2.
-[[File:Yeast_Beasts_Presentation.pdf]]
+[https://docs.google.com/presentation/d/1DnYfkl9j5hy6EqTc1XT0tT7A_husJCJNNgsxhncsozY/edit?usp=sharing|presentation]
 ==References & Acknowledgements==

@@ Line 41: / Line 41: @@
 ===April 25 Notes===
 We are waiting for QA to finish Milestone 5 so we can do Milestone 6, In the meantime we are going to work on the presentation
 ==References & Acknowledgements==

← Older revision		Revision as of 21:04, 25 April 2024
Line 40:		Line 40:

	===April 25 Notes===		===April 25 Notes===
		+	We are waiting for QA to finish Milestone 5 so we can do Milestone 6, In the meantime we are going to work on the presentation

	==References & Acknowledgements==		==References & Acknowledgements==