Asandle1 Week 9 - Revision history

Asandle1: /* References */ fixed references to only include references

2024-03-25T21:44:12Z

‎References: fixed references to only include references

Asandle1: /* Data and Files */ fixed name

2024-03-21T21:48:37Z

‎Data and Files: fixed name

Asandle1: /* Data and Files */ added media for txt

2024-03-21T21:47:33Z

‎Data and Files: added media for txt

Asandle1: /* Methods/Results/Electronic Notebook */ Updated the %'s

2024-03-21T20:43:26Z

‎Methods/Results/Electronic Notebook: Updated the %'s

Asandle1: /* Purpose */ purpose added

2024-03-21T01:13:09Z

‎Purpose: purpose added

Asandle1: /* Data and Files */ spacing

2024-03-21T01:09:58Z

‎Data and Files: spacing

Asandle1: /* Conclusion */ updated conclusion

2024-03-21T01:09:39Z

‎Conclusion: updated conclusion

Asandle1: /* Acknowledgements & References */ references added

2024-03-21T01:08:24Z

‎Acknowledgements & References: references added

Asandle1: /* Acknowledgments */ added the acknowledgments

2024-03-21T01:04:27Z

‎Acknowledgments: added the acknowledgments

Asandle1: /* Acknowledgements & References */ added acknowledgements

2024-03-21T00:58:37Z

‎Acknowledgements & References: added acknowledgements

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 == References ==
 * Dahlquist, K. Master_sheet_dGLN3.
 * LMU BioDB 2024. (2024). Week 9. Retrieved Mar 20, 2024, from https://xmlpipedb.cs.lmu.edu/biodb/Spring2024/index.php/Week_9

@@ Line 139: / Line 139: @@
 [[Media:BIOL367_S24_Andrew_dGLN3_p-value_slide.pptx]]
-[[Media:AS&CK_BIOL367_S24_microarray-data_dGLN3-2.txt]]
+[[Media:AS&CK_BIOL367_STEM.txt]]
 =Conclusion=

← Older revision		Revision as of 21:47, 21 March 2024
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	[[Media:BIOL367_S24_Andrew_dGLN3_p-value_slide.pptx]]		[[Media:BIOL367_S24_Andrew_dGLN3_p-value_slide.pptx]]
		+
		+	[[Media:AS&CK_BIOL367_S24_microarray-data_dGLN3-2.txt]]

	=Conclusion=		=Conclusion=

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 ) YDL042C's unadjusted P-value is 0.015418948. It's Bonferroni p-value is 95.42786686. It's B&H correct value is 1.
 ) The average log fold change are as follows for YGR159C: t15 = 0.503525, t30 = 1.5781, t60 = 0.60005, t90 = -0.075175, t120 = -0.168375.
 =Data and Files=

← Older revision		Revision as of 01:13, 21 March 2024
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	=Purpose=		=Purpose=
		+	The purpose of this assignment is to get experience with the analysis part of the "data life cycle" for DNA microarray datasets and to "develop an intuition about different p-value cut-offs and their meanings.
		+
		+	It also is to show how to keep a detailed electronic lab notebook to make our research reproducible
		+	to develop an intuition about what different p-value cut-offs mean.

	=Methods/Results/Electronic Notebook=		=Methods/Results/Electronic Notebook=

@@ Line 130: / Line 130: @@
 =Conclusion=
---You will write a summary paragraph that gives the conclusions from this week's analysis.--
+I am not sure we have concluded this task yet. I think the conclusion will come with part 2.
 =Acknowledgements & References=

@@ Line 133: / Line 133: @@
 =Acknowledgements & References=
 == Acknowledgments ==
@@ Line 148: / Line 146: @@
 *In this section, you need to provide properly formatted citations to any '''''content''''' that was not entirely of your own devising.  This includes, but is not limited to:
-** methods
+* Dahlquist, K. Master_sheet_dGLN3.
-** data
+* LMU BioDB 2024. (2024). Week 9. Retrieved Mar 20, 2024, from https://xmlpipedb.cs.lmu.edu/biodb/Spring2024/index.php/Week_9
-** facts

@@ Line 138: / Line 138: @@
 == Acknowledgments ==
-# I worked on this assignment with Charlotte. I helped her with a lot of her excel stuff because I had more experience. I did not get help from her because I didn't need any in class. I texted her at 5:57 pm on wednesday about the p-values for B&H being strangely low for me.
+# I worked on this assignment with [[User:Ckapla12| Charlotte Kaplan]] in class. I helped her with a lot of her excel stuff because I had more experience. I texted her at 5:57 pm on wednesday about the p-values for B&H being strangely low for me. For the most part I did the assignment on my own and really was helping her catch up to me.
-# You '''''must''''' acknowledge your homework partner or team members with whom you worked, giving details of the nature of the collaboration.  You should include when and how you met and what content you worked on together.  An appropriate statement could be (but is not limited to) the following:
+# Dr. Dahlquist was very helpful in class when I ran into some errors with the data. The specific errors are in the electronic notebook.
-#* I worked with my homework partner (give name and link name to their user page) in class.  We met face-to-face one time outside of class.  We texted/e-mailed/chatted online three times.  We worked on the <details> portion of the assignment together.
+#I used the Week 9 instructions and followed them.
-# Acknowledge anyone else you worked with who was not your assigned partner.  This could be Dr. Dahlquist (for example, via office hours), the TA, other students in the class, or even other students or faculty outside of the class.
+#* Except for what is noted above, this individual journal entry was completed by me and not copied from another source.
-# If you copied <code>wiki syntax</code> or a particular ''style'' from another wiki page, acknowledge that here.  Provide the user name of the original page, if possible, and provide a link to the page from which you copied the syntax or style.
-# If you need to reference '''''content''''' (such as the methods of a protocol), that belongs in the References section where you will give a include a formal APA-formatted citation (see below).
+:04, 20 March 2024 (PDT)
 == References ==

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 =Acknowledgements & References=
 Acknowledgments, and References (as specified by the Week 1 assignment).
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