Ckaplan Week 15 - Revision history

Ckapla12: adding my reflection

2024-05-03T02:22:04Z

adding my reflection

Ckapla12: signature

2024-05-03T02:12:12Z

signature

Ckapla12: editing link

2024-05-03T02:08:43Z

editing link

Ckapla12: editing references and acknowledgements

2024-05-03T02:08:12Z

editing references and acknowledgements

Ckapla12: linking our data analyst week 15 page

2024-05-03T01:18:12Z

linking our data analyst week 15 page

Ckapla12: linking to our data analysts week 14 page, adding acknowledgments and references and yeast beasts template

2024-05-03T01:16:28Z

linking to our data analysts week 14 page, adding acknowledgments and references and yeast beasts template

Ckapla12: explaining combined reflection

2024-05-03T01:14:51Z

explaining combined reflection

Ckapla12: invoking template

2024-05-03T01:00:40Z

invoking template

Ckapla12: reuploading presentation

2024-05-03T01:00:15Z

reuploading presentation

Ckapla12: our presentation

2024-05-02T06:27:08Z

our presentation

← Older revision		Revision as of 02:22, 3 May 2024
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	See our data analyst week 15 progress here: [[Data Analysts Week 15]]		See our data analyst week 15 progress here: [[Data Analysts Week 15]]
		+
		+	====Charlotte's Reflection Week 14/15:====
		+	[[User:Kmill104\| Katherine Miller]] and I, being the data analysts, worked with Quality Assurance [[User:Hivanson\| Hailey Ivanson]] to complete Milestone 3 and Milestone 4 in person for week 14. [[User:Kmill104\| Katherine Miller]] [[User:Hivanson\| Hailey Ivanson]] and I to complete Milestone 2 and Milestone 3 in person. We created our ANOVA sheet and calculated the Bonferroni and B&H values, obtaining our needed p-values, and we also performed a sanity check. We then created a CHP_STEM file to filter the correct BH values to p>0.05, getting rid of any div errors. We saved this as a text file and proceeded to work on our GO and Gene tables. We found 7 significant profiles within profile 41. We had issues creating the queries for Miestone 5, so [[User:Msymond1\| Dean Symonds]] assisted us in creating the queries needed to run GRNmap. What worked since we had experience from previous assignments, creating our CHP_stem file, filtering p-values, and choosing our transcription factors did not raise too many questions. What we struggled with was creating the queries needed for Dr. Dahlquist to run the GRNmap. Without Dean's help, we could not have done this on our own. To fix what we had issues with, it would have been easier if all six of us could meet at the same time, although it is understandable due to varying schedules.
		+
		+	[[User:Ckapla12\|Ckapla12]] ([[User talk:Ckapla12\|talk]]) 19:21, 2 May 2024 (PDT)

	==Acknowledgements==		==Acknowledgements==

← Older revision		Revision as of 02:12, 3 May 2024
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	[[Category:Team Project]]		[[Category:Team Project]]

		+	[[User:Ckapla12\|Ckapla12]] ([[User talk:Ckapla12\|talk]]) 19:12, 2 May 2024 (PDT)

	{{ckaplan}}		{{ckaplan}}

@@ Line 10: / Line 10: @@
 ==Acknowledgements==
-This procedure was adapted from the Data Analysis page Milestone 3 and 4 protocol, linked here: [[Data Analysis]] The procedure for Milestone 3 was also adapted from the steps outlined in the [[Week 9]] assignment page. The procedure for Milestone 4 was also adapted from the steps outlined in the [[Week 10]] assignment page. For Milestone 5, we followed the procedure listed on [[Data Analysts]]. Our quality assurance, [[User:Hivanson| Hailey Ivanson]] was a key part in completing these milestones, and her help was very valuable. [[User:Msymond1| Dean Symonds]] assisted us in creating an input workbook for GRNmap using queries to the Microsoft Access database created by the Coders/Designers.
+This procedure was adapted from the Data Analysis page Milestone 3 and 4 protocol, linked here: [[Data Analysis]] The procedure for Milestone 3 was also adapted from the steps outlined in the [[Week 9]] assignment page. The procedure for Milestone 4 was also adapted from the steps outlined in the [[Week 10]] assignment page. For Milestone 5, we followed the procedure listed on [[Data Analysis]]. Our quality assurance, [[User:Hivanson| Hailey Ivanson]] was a key part in completing these milestones, and her help was very valuable. [[User:Msymond1| Dean Symonds]] assisted us in creating an input workbook for GRNmap using queries to the Microsoft Access database created by the Coders/Designers.
 ==References==

@@ Line 10: / Line 10: @@
 ==Acknowledgements==
-This procedure was adapted from the Data Analysis page Milestone 3 and 4 protocol, linked here: [[Data Analysis]] The procedure for Milestone 3 was also adapted from the steps outlined in the [[Week 9]] assignment page. The procedure for Milestone 4 was also adapted from the steps outlined in the [[Week 10]] assignment page. Our quality assurance, [[User:Hivanson| Hailey Ivanson]] was a key part in completing this milestone, and her help was very valuable.
+This procedure was adapted from the Data Analysis page Milestone 3 and 4 protocol, linked here: [[Data Analysis]] The procedure for Milestone 3 was also adapted from the steps outlined in the [[Week 9]] assignment page. The procedure for Milestone 4 was also adapted from the steps outlined in the [[Week 10]] assignment page. For Milestone 5, we followed the procedure listed on [[Data Analysts]]. Our quality assurance, [[User:Hivanson| Hailey Ivanson]] was a key part in completing these milestones, and her help was very valuable. [[User:Msymond1| Dean Symonds]] assisted us in creating an input workbook for GRNmap using queries to the Microsoft Access database created by the Coders/Designers.
 ==References==
 LMU BioDB 2024. (2024). Week 14. Retrieved April 23, 2024 from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Week_14
 LMU BioDB 2024. (2024). Week 9. Retrieved April 23, 2024 from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Week_9

← Older revision		Revision as of 01:18, 3 May 2024
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	See our data analyst week 14 progress here: [[Data Analysts Week 14]]		See our data analyst week 14 progress here: [[Data Analysts Week 14]]
		+
		+	See our data analyst week 15 progress here: [[Data Analysts Week 15]]

	==Acknowledgements==		==Acknowledgements==

← Older revision		Revision as of 01:16, 3 May 2024
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	The week 14 and 15 reflections will be combined, as advised by Dr. Dahlquist. This is because of the wiki being intermittently down during week 14.		The week 14 and 15 reflections will be combined, as advised by Dr. Dahlquist. This is because of the wiki being intermittently down during week 14.
		+
		+	See our data analyst week 14 progress here: [[Data Analysts Week 14]]
		+
		+	==Acknowledgements==
		+	This procedure was adapted from the Data Analysis page Milestone 3 and 4 protocol, linked here: [[Data Analysis]] The procedure for Milestone 3 was also adapted from the steps outlined in the [[Week 9]] assignment page. The procedure for Milestone 4 was also adapted from the steps outlined in the [[Week 10]] assignment page. Our quality assurance, [[User:Hivanson\| Hailey Ivanson]] was a key part in completing this milestone, and her help was very valuable.
		+
		+	==References==
		+	LMU BioDB 2024. (2024). Week 14. Retrieved April 23, 2024 from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Week_14
		+
		+	LMU BioDB 2024. (2024). Week 9. Retrieved April 23, 2024 from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Week_9
		+
		+	LMU BioDB 2024. (2024). Week 10. Retrieved April 23, 2024 from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Week_10
		+
		+	LMU BioDB 2024. (2024). Data Analysis. Retrieved April 23, 2024 from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Data_Analysis
		+
		+	{{Yeast Beasts}}
		+	[[Category:Journal Entry]]
		+	[[Category:Team Project]]
		+

	{{ckaplan}}		{{ckaplan}}

← Older revision		Revision as of 01:14, 3 May 2024
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	[[Media:Yeast_Beasts_Presentation.pdf \| Final version of presentation]]		[[Media:Yeast_Beasts_Presentation.pdf \| Final version of presentation]]
		+
		+	The week 14 and 15 reflections will be combined, as advised by Dr. Dahlquist. This is because of the wiki being intermittently down during week 14.

	{{ckaplan}}		{{ckaplan}}

← Older revision		Revision as of 01:00, 3 May 2024
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	[[Media:Yeast_Beasts_Presentation.pdf \| Final version of presentation]]		[[Media:Yeast_Beasts_Presentation.pdf \| Final version of presentation]]
		+
		+	{{ckaplan}}

← Older revision		Revision as of 01:00, 3 May 2024
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	[[File:Yeast_Beasts_Presentation.pdf]]		[[File:Yeast_Beasts_Presentation.pdf]]
		+
		+	[[Media:Yeast_Beasts_Presentation.pdf \| Final version of presentation]]

← Older revision		Revision as of 06:27, 2 May 2024
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−	[[~~Media~~: Yeast_Beasts_Presentation.~~zip~~]]	+	[[File:Yeast_Beasts_Presentation.pdf]]