Data Analysts Week 15 - Revision history

Kmill104: talk

2024-05-03T18:58:37Z

talk

Kmill104: /* Acknowledgements */ updating format

2024-05-03T18:28:24Z

‎Acknowledgements: updating format

Kmill104: /* Milestone 5 */ updating procedure

2024-05-03T18:27:14Z

‎Milestone 5: updating procedure

Kmill104: /* Milestone 5 */ adding more detail

2024-05-03T02:17:01Z

‎Milestone 5: adding more detail

Ckapla12: fixing acknowledgements and references, adding signature

2024-05-03T02:10:44Z

fixing acknowledgements and references, adding signature

Ckapla12: format

2024-05-03T01:55:04Z

format

Ckapla12: references and acknowledgement

2024-05-03T01:54:54Z

references and acknowledgement

Ckapla12: finishing milestone 5

2024-05-03T01:53:17Z

finishing milestone 5

Ckapla12: format

2024-05-03T01:27:51Z

format

Ckapla12: creating milestone 5

2024-05-03T01:27:34Z

creating milestone 5

← Older revision		Revision as of 18:58, 3 May 2024
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	Except for what is noted above, this entry was completed by Katie and Charlotte and not copied from another source. [[User:Ckapla12\|Ckapla12]] ([[User talk:Ckapla12\|talk]]) 19:10, 2 May 2024 (PDT)		Except for what is noted above, this entry was completed by Katie and Charlotte and not copied from another source. [[User:Ckapla12\|Ckapla12]] ([[User talk:Ckapla12\|talk]]) 19:10, 2 May 2024 (PDT)
		+
		+	[[User:Kmill104\|Kmill104]] ([[User talk:Kmill104\|talk]]) 11:58, 3 May 2024 (PDT)

@@ Line 16: / Line 16: @@
 ==Acknowledgements==
-This procedure was adapted from the Data Analysis page Milestone 3 and 4 protocol, linked here: [[Data Analysis]] The procedure for Milestone 3 was also adapted from the steps outlined in the [[Week 9]] assignment page. The procedure for Milestone 4 was also adapted from the steps outlined in the [[Week 10]] assignment page. For Milestone 5, we followed the procedure listed on [[Data Analysis]]. Our quality assurance, [[User:Hivanson| Hailey Ivanson]] was a key part in completing these milestones, and her help was very valuable. [[User:Msymond1| Dean Symonds]] assisted us in creating an input workbook for GRNmap using queries to the Microsoft Access database created by the Coders/Designers.
+This procedure was adapted from the Data Analysis page Milestone 3 and 4 protocol, linked here: [[Data Analysis]]
 ==References==

@@ Line 1: / Line 1: @@
 ===Milestone 5===
-#We created a gene regulatory network for GRNmap using using the Access database that the Coders/Designers made.
+#We examined the YEASTRACT output for profile 41 in Excel, and selected the first 23 transcription factors for analysis. This list was sent to the Coder/Designers, who found 22 of these factors in the database.
-#[[User:Msymond1| Dean Symonds]] assisted us in creating an input workbook for GRNmap using queries to the Microsoft Access database created by the Coders/Designers.
+#[[User:Msymond1| Dean Symonds]] assisted us in creating an input workbook for GRNmap using queries to the Microsoft Access database created by the Coders/Designers. The query designs are linked here: [https://lmu.app.box.com/folder/261861431194?s=y6x97kqcjlxfezhnbpvck4h4oe4pm366]
 The queries were created to fill our workbook sheets as follows:
 *production_rates
 *degradation_rates
-*wt_log2_expression (based on the CHP-treated data)
+*optimization_parameters
-*network
+*threshold_b
-*We sent our data to Dr. Dahlquist and she helped us interpret the data.
+The input data is linked here: [https://lmu.app.box.com/file/1518231373852]
 ==Acknowledgements==

@@ Line 3: / Line 3: @@
 #[[User:Msymond1| Dean Symonds]] assisted us in creating an input workbook for GRNmap using queries to the Microsoft Access database created by the Coders/Designers.
-The queries were created as follows:
+The queries were created to fill our workbook sheets as follows:
 *production_rates
 *degradation_rates

@@ Line 12: / Line 12: @@
 ==Acknowledgements==
-This procedure was adapted from the Data Analysis page Milestone 3 and 4 protocol, linked here: [[Data Analysis]] The procedure for Milestone 3 was also adapted from the steps outlined in the [[Week 9]] assignment page. The procedure for Milestone 4 was also adapted from the steps outlined in the [[Week 10]] assignment page. Our quality assurance, [[User:Hivanson| Hailey Ivanson]] was a key part in completing this milestone, and her help was very valuable.
+This procedure was adapted from the Data Analysis page Milestone 3 and 4 protocol, linked here: [[Data Analysis]] The procedure for Milestone 3 was also adapted from the steps outlined in the [[Week 9]] assignment page. The procedure for Milestone 4 was also adapted from the steps outlined in the [[Week 10]] assignment page. For Milestone 5, we followed the procedure listed on [[Data Analysis]]. Our quality assurance, [[User:Hivanson| Hailey Ivanson]] was a key part in completing these milestones, and her help was very valuable. [[User:Msymond1| Dean Symonds]] assisted us in creating an input workbook for GRNmap using queries to the Microsoft Access database created by the Coders/Designers.
 ==References==
@@ Line 21: / Line 18: @@
 LMU BioDB 2024. (2024). Week 15. Retrieved May 2, 2024 from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Week_15
 LMU BioDB 2024. (2024). Data Analysis. Retrieved April 23, 2024 from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Data_Analysis
@@ Line 27: / Line 28: @@
 [[Category:Journal Entry]]
 [[Category:Team Project]]

← Older revision		Revision as of 01:55, 3 May 2024
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	LMU BioDB 2024. (2024). Week 15. Retrieved May 2, 2024 from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Week_15		LMU BioDB 2024. (2024). Week 15. Retrieved May 2, 2024 from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Week_15
−

	LMU BioDB 2024. (2024). Data Analysis. Retrieved April 23, 2024 from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Data_Analysis		LMU BioDB 2024. (2024). Data Analysis. Retrieved April 23, 2024 from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Data_Analysis

← Older revision		Revision as of 01:54, 3 May 2024
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	*We sent our data to Dr. Dahlquist and she helped us interpret the data.		*We sent our data to Dr. Dahlquist and she helped us interpret the data.
		+
		+	==Acknowledgements==
		+	This procedure was adapted from the Data Analysis page Milestone 3 and 4 protocol, linked here: [[Data Analysis]] The procedure for Milestone 3 was also adapted from the steps outlined in the [[Week 9]] assignment page. The procedure for Milestone 4 was also adapted from the steps outlined in the [[Week 10]] assignment page. Our quality assurance, [[User:Hivanson\| Hailey Ivanson]] was a key part in completing this milestone, and her help was very valuable.
		+	Except for what is noted above, this individual journal entry was completed by Katie and Charlotte and not copied from another source.
		+
		+	[[User:Ckapla12\|Ckapla12]] ([[User talk:Ckapla12\|talk]]) 18:54, 2 May 2024 (PDT)
		+
		+	==References==
		+	LMU BioDB 2024. (2024). Week 14. Retrieved April 23, 2024 from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Week_14
		+
		+	LMU BioDB 2024. (2024). Week 15. Retrieved May 2, 2024 from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Week_15
		+
		+
		+	LMU BioDB 2024. (2024). Data Analysis. Retrieved April 23, 2024 from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Data_Analysis
		+
		+	{{Yeast Beasts}}
		+	[[Category:Journal Entry]]
		+	[[Category:Team Project]]

← Older revision		Revision as of 01:53, 3 May 2024
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	===Milestone 5===		===Milestone 5===
		+	#We created a gene regulatory network for GRNmap using using the Access database that the Coders/Designers made.
		+	#[[User:Msymond1\| Dean Symonds]] assisted us in creating an input workbook for GRNmap using queries to the Microsoft Access database created by the Coders/Designers.
		+
		+	The queries were created as follows:
		+	*production_rates
		+	*degradation_rates
		+	*wt_log2_expression (based on the CHP-treated data)
		+	*network
		+
		+	*We sent our data to Dr. Dahlquist and she helped us interpret the data.

← Older revision		Revision as of 01:27, 3 May 2024
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−	===Milestone 5:===	+	===Milestone 5===