MSymond1 Week 5 - Revision history

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← Older revision		Revision as of 06:03, 15 February 2024
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	*DeRisi, J.L., Iyer, V.R., and Brown, P.O. (1997) Exploring the Metabolic and Genetic Control of Gene Expression on a Genomic Scale. Science 278: 680-686. DOI: https://doi.org/10.1126/science.278.5338.680		*DeRisi, J.L., Iyer, V.R., and Brown, P.O. (1997) Exploring the Metabolic and Genetic Control of Gene Expression on a Genomic Scale. Science 278: 680-686. DOI: https://doi.org/10.1126/science.278.5338.680
	*LMU BioDB 2024. (2024). Week 5. Retrieved February 14, 2024, from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Week_5		*LMU BioDB 2024. (2024). Week 5. Retrieved February 14, 2024, from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Week_5
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		+	==Template==
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 ==References==
-Alberts et al. (2002) Molecular Biology of the Cell, Ch. 8: Microarrays
+*Alberts et al. (2002) Molecular Biology of the Cell, Ch. 8: Microarrays
-Brown, P.O. & Botstein, D. (1999) Exploring the new world of the genome with DNA microarrays Nature Genetics 21: 33-37. https://doi.org/10.1038/4462
+*Brown, P.O. & Botstein, D. (1999) Exploring the new world of the genome with DNA microarrays Nature Genetics 21: 33-37. https://doi.org/10.1038/4462
-Campbell, A.M. and Heyer, L.J. (2003), “Chapter 4: Basic Research with DNA Microarrays”, in Discovering Genomics, Proteomics, and Bioinformatics, Cold Spring Harbor Laboratory Press, pp. 107-124. (Available on Brightspace)
+*Campbell, A.M. and Heyer, L.J. (2003), “Chapter 4: Basic Research with DNA Microarrays”, in Discovering Genomics, Proteomics, and Bioinformatics, Cold Spring Harbor Laboratory Press, pp. 107-124. (Available on Brightspace)
-DeRisi, J.L., Iyer, V.R., and Brown, P.O. (1997) Exploring the Metabolic and Genetic Control of Gene Expression on a Genomic Scale. Science 278: 680-686. DOI: https://doi.org/10.1126/science.278.5338.680
+*DeRisi, J.L., Iyer, V.R., and Brown, P.O. (1997) Exploring the Metabolic and Genetic Control of Gene Expression on a Genomic Scale. Science 278: 680-686. DOI: https://doi.org/10.1126/science.278.5338.680
-LMU BioDB 2024. (2024). Week 5. Retrieved February 14, 2024, from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Week_5
+*LMU BioDB 2024. (2024). Week 5. Retrieved February 14, 2024, from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Week_5

← Older revision		Revision as of 06:01, 15 February 2024
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	==References==		==References==
		+	Alberts et al. (2002) Molecular Biology of the Cell, Ch. 8: Microarrays
		+	Brown, P.O. & Botstein, D. (1999) Exploring the new world of the genome with DNA microarrays Nature Genetics 21: 33-37. https://doi.org/10.1038/4462
		+	Campbell, A.M. and Heyer, L.J. (2003), “Chapter 4: Basic Research with DNA Microarrays”, in Discovering Genomics, Proteomics, and Bioinformatics, Cold Spring Harbor Laboratory Press, pp. 107-124. (Available on Brightspace)
		+	DeRisi, J.L., Iyer, V.R., and Brown, P.O. (1997) Exploring the Metabolic and Genetic Control of Gene Expression on a Genomic Scale. Science 278: 680-686. DOI: https://doi.org/10.1126/science.278.5338.680
		+	LMU BioDB 2024. (2024). Week 5. Retrieved February 14, 2024, from https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Week_5

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 ==Acknowledgements==
-I texted my homework partner, Charlotte, about the first question. We texted briefly about a few other questions. I also utilized some code to make photos smaller.
+I texted my homework partner, Charlotte, about a few of the questions for the assignment to help us understand the questions and the readings better. Except for what is noted above, this individual journal entry was completed by me and not copied from another source. [[User:Msymond1|Msymond1]] ([[User talk:Msymond1|talk]]) 21:58, 14 February 2024 (PST)
 ==References==

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 The purpose of this assignment is to learn about how DNA microarrays work to sequence genomes. This assignment will include working through some examples of microarrays as well as uncovering times in which the ethics of data collection were violated.
 ==Questions==
-#This is the graph of the genes[[File:Question1.png|400px|thumb|right|alt text]]
+#See Figure 1[[File:Question1.png|500px|thumb|right|figure 1]]
-#here is a table of the colors for the genes X,Y, and Z [[File:Question2.png|400px|thumb|right|alt text]]
+#See Figure 2[[File:Question2.png|500px|thumb|right|figure 2]]
 #Genes X and Y transcribed somewhat similarly. They both started at 1 and then increased, and then decreased down to about 1, and then close to 0
 #The spots would be yellow at the first time point because they have not had any repression or induction yet. The technical reason for the spots showing up as yellow is the fact that they have not had any change since the starting point in their induction or transgression. The yellow color comes from the fact that it is what is in between the colors red and green, which are the colors that represent induction and transgression respectively. The biological reason that most genes ended up as yellow is because most genes do not get transgressed or induced or code for proteins.