Nstojan1 Week 5 - Revision history

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‎References: added reference

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← Older revision		Revision as of 23:38, 16 February 2024
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	==References==		==References==
		+	*LMU BioDB 2024. (2024). Week 5. Retrieved February 16, 2024. https://xmlpipedb.cs.lmu.edu/biodb/spring2024/index.php/Week_5
		+	*Campbell, A.M. and Heyer, L.J. (2003), “Chapter 4: Basic Research with DNA Microarrays”, in Discovering Genomics, Proteomics, and Bioinformatics, Cold Spring Harbor Laboratory Press, pp. 107-124.

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 ==Acknowledgments==
-I worked with [[User:Asandle1]], we spoke over text about some of the problems.
+*I worked with [[User:Asandle1]], we spoke over text about some of the problems.
-I consulted with [[User:kdahlquist]] about accessing the work and troubleshooted issues with my Wiki.
+*I consulted with [[User:kdahlquist]] about accessing the work and troubleshooted issues with my Wiki.
 ==References==

@@ Line 28: / Line 28: @@
 ==Acknowledgments==
 I worked with [[User:Asandle1]], we spoke over text about some of the problems.
-I consulted with [[User:kdhalquist]] about accessing the work and troubleshooted issues with my Wiki.
+I consulted with [[User:kdahlquist]] about accessing the work and troubleshooted issues with my Wiki.
 ==References==

@@ Line 27: / Line 27: @@
 ==Acknowledgments==
-I worked with [[Asandle1]], we spoke over text about some of the problems.
+I worked with [[User:Asandle1]], we spoke over text about some of the problems.
-I consulted with [[kdhalquist]] about accessing the work and troubleshooted issues with my Wiki.
+I consulted with [[User:kdhalquist]] about accessing the work and troubleshooted issues with my Wiki.
 ==References==

← Older revision		Revision as of 23:34, 16 February 2024
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	==Acknowledgments==		==Acknowledgments==
		+	I worked with [[Asandle1]], we spoke over text about some of the problems.
		+	I consulted with [[kdhalquist]] about accessing the work and troubleshooted issues with my Wiki.
		+
	==References==		==References==

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 ==Purpose==
 ==Questions==
 #(Question 5, p. 110) Choose two genes from Figure 4.6b (PDF of figures on Brightspace) and draw a graph to represent the change in transcription over time. You can either create your plot in Excel and put the image up on your wiki page or you can do it by hand and upload a picture or scan.

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 ==Questions==
 #(Question 5, p. 110) Choose two genes from Figure 4.6b (PDF of figures on Brightspace) and draw a graph to represent the change in transcription over time. You can either create your plot in Excel and put the image up on your wiki page or you can do it by hand and upload a picture or scan.
-#*[[Screenshot_2024-02-16_at_3.18.03_PM.png]]
+#*[[File:Screenshot_2024-02-16_at_3.18.03_PM.png|Graph]]
 #(Question 6b, p. 110) Look at Figure 4.7, which depicts the loss of oxygen over time and the transcriptional response of three genes. These data are the ratios of transcription for genes X, Y, and Z during the depletion of oxygen. Using the color scale from Figure 4.6, determine the color for each ratio in Figure 4.7b. (Use the nomenclature "bright green", "medium green", "dim green", "black", "dim red", "medium red", or "bright red" for your answers.)
 #*Gene X - 1 hour: Black, 3 hour - medium red, 5 hour - black, 9 hour - dim green

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 #(Question 6b, p. 110) Look at Figure 4.7, which depicts the loss of oxygen over time and the transcriptional response of three genes. These data are the ratios of transcription for genes X, Y, and Z during the depletion of oxygen. Using the color scale from Figure 4.6, determine the color for each ratio in Figure 4.7b. (Use the nomenclature "bright green", "medium green", "dim green", "black", "dim red", "medium red", or "bright red" for your answers.)
 #*Gene X - 1 hour: Black, 3 hour - medium red, 5 hour - black, 9 hour - dim green
-Gene Y - 1 hour: black, 3 hour: bright red, 5 hour: black, 9 hour: dim green
+#*Gene Y - 1 hour: black, 3 hour: bright red, 5 hour: black, 9 hour: dim green
-Gene Z - 1 hour: black, 3 hour: dim red,  5 hour - medium red, 9 hour- medium red
+#*Gene Z - 1 hour: black, 3 hour: dim red,  5 hour - medium red, 9 hour- medium red
 (Question 7, p. 110) Were any of the genes in Figure 4.7b transcribed similarly? If so, which ones were transcribed similarly to which ones?
 #*I think that Gene X and Gene Y are transcribed similarly because the only difference is that at hour 3, Gene X is dim red and Gene Z is bright red. All of the Genes start the same with Black at hour 1 but then Gene Z remains red.