Difference between revisions of "Hivanson and Nstojan1 Week 3"
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(added title: IMD3) |
(→IMD3: added instructions from week 3 (Temporary)) |
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==IMD3== | ==IMD3== | ||
| + | ===Summary of Function=== | ||
| + | |||
| + | #What is the standard name, systematic name, and name description for your gene (from SGD)? | ||
| + | #What is the gene ID (identifier) for your gene in all four databases (SGD, NCBI Gene, Ensembl, UniProt)? | ||
| + | #*Provide hyperlinks to the specific pages for your gene in each of the above databases. | ||
| + | #What is the DNA sequence of your gene? | ||
| + | #What is the protein sequence corresponding to your gene? | ||
| + | #*Go to the ExPASy tool and translate the DNA sequence of your gene. Which reading frame encodes the protein sequence? Take a screenshot of your results, display it on your wiki page, and state which frame it is. | ||
| + | #What is the function of your gene? | ||
| + | #What was different about the information provided about your gene in each of the parent databases? | ||
| + | #*Were there differences in content, the information or data itself? | ||
| + | #*Were there differences in presentation of the information? | ||
| + | #Why did you choose your particular gene? i.e., why is it interesting to you and your partner? | ||
| + | #Include an image related to your gene (be careful that you do not violate any copyright restrictions!) | ||
| + | #*Please make the image something scientific (not like the random images seen on the SGD blog posts). | ||
| + | #*If a 3D structure of the protein your gene encodes is available, you can choose to embed a rotating image of the structure on your page using the FirstGlance in Jmol software. This is optional, a different static image would be OK, too. | ||
| + | #*The NCBI Structure database and RSCB Protein Databank also display structures. | ||
Revision as of 17:49, 31 January 2024
IMD3
Summary of Function
- What is the standard name, systematic name, and name description for your gene (from SGD)?
- What is the gene ID (identifier) for your gene in all four databases (SGD, NCBI Gene, Ensembl, UniProt)?
- Provide hyperlinks to the specific pages for your gene in each of the above databases.
- What is the DNA sequence of your gene?
- What is the protein sequence corresponding to your gene?
- Go to the ExPASy tool and translate the DNA sequence of your gene. Which reading frame encodes the protein sequence? Take a screenshot of your results, display it on your wiki page, and state which frame it is.
- What is the function of your gene?
- What was different about the information provided about your gene in each of the parent databases?
- Were there differences in content, the information or data itself?
- Were there differences in presentation of the information?
- Why did you choose your particular gene? i.e., why is it interesting to you and your partner?
- Include an image related to your gene (be careful that you do not violate any copyright restrictions!)
- Please make the image something scientific (not like the random images seen on the SGD blog posts).
- If a 3D structure of the protein your gene encodes is available, you can choose to embed a rotating image of the structure on your page using the FirstGlance in Jmol software. This is optional, a different static image would be OK, too.
- The NCBI Structure database and RSCB Protein Databank also display structures.
