Difference between revisions of "User:Kdahlquist"

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=== Sandbox ===
 
=== Sandbox ===
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[[Template:Course Schedule Divider]]
 
  
 
# Item 1
 
# Item 1
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* [https://www.tablesgenerator.com/mediawiki_tables Tables Generator web application]
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[[New wiki page]]
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[[Kdahlquist Week 2]]
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[[Week 1]]
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[http://www.lmu.edu LMU home page]
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== Level 1 ==
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=== Level 2 ===
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==== Level 3 ====
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* bullet point 1
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* bullet point 2
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[[Category:Journal Entry]]
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[[Template:Kdahlquist]]
  
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{| class="wikitable"
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{{Kdahlquist}}
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|-
 
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! Week<br />
 
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! Date<br />
 
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! Before Class Reading<br />
 
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! During Class Topic
 
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! After Class Assignment
 
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|- style="background-color:#dae8fc;"
 
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| colspan="5" | '''Part 1: Building Blocks (Genetic Code and Manipulating Text)'''
 
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|-
 
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|- style="vertical-align:bottom;"
 
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| rowspan="2" | 1
 
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| 9-Jan
 
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| <!--Reading-->
 
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|
 
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* Syllabus walkthrough
 
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* Pairwise interviews and introductions
 
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* Academic Honesty case studies
 
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* Wiki account setup
 
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| rowspan="2" | [[Week 1]]<br /><br />(due 12:01am 1/18)<br /><br /><br />[[Class Journal Week 1]]<br />
 
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|- style="vertical-align:bottom;"
 
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| 11-Jan
 
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| <!--Reading-->
 
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|
 
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* What is a model?
 
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* Model of a cell/model of a computer<br />
 
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|- style="vertical-align:bottom;"
 
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| rowspan="2" | 2
 
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| 16-Jan
 
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| <!--Reading-->
 
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|
 
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* Discuss the Week 1 assignment
 
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** Wiki syntax overview
 
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** Lab session to setup User wiki page<br />
 
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| rowspan="2" | [[Week 2]]<br /><br />(due 12:01am 1/25)<br /><br />[[Class Journal Week 2]]<br />
 
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|- style="vertical-align:bottom;"
 
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| 18-Jan
 
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| <!--Reading-->
 
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|
 
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* DNA structure
 
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|- style="vertical-align:bottom;"
 
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| rowspan="2" | 3
 
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| 23-Jan
 
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| <!--Reading-->
 
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|
 
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* Aipotu work session
 
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| rowspan="2" | [[Week 3]]<br /><br />(due 12:01am 2/1)<br /><br />[[Class Journal Week 3]]<br />
 
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|- style="vertical-align:bottom;"
 
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| 25-Jan
 
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| <!--Reading-->
 
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|
 
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* Genes as models
 
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* Central model of molecular biology
 
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* Paper and pencil exercise<br />
 
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|- style="vertical-align:bottom;"
 
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| rowspan="2" | 4
 
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| 30-Jan
 
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| <!--Reading-->
 
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|
 
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Introduction to biological databases (part 1)<br />
 
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* What is bioinformatics?
 
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* Open Science Ecosystem
 
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* DataONE: Data management and the life cycle of data
 
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| rowspan="2" | [[Week 4]]<br /><br />(due 12:01am 2/8)<br /><br />[[Class Journal Week 4]]<br />
 
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|- style="vertical-align:bottom;"
 
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| 1-Feb
 
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| <!--Reading-->
 
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|
 
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Introduction to biological databases (part 2)<br />
 
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*Where's my stuff?
 
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* An overview of computers, networks, files, web applications, web services, and databases
 
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* Names, URLs, identifiers
 
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**As applied to biology: genes, species
 
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* "Stuff" on the worldwide web
 
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**Accessing the web on a browser<br />
 
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|- style="vertical-align:bottom;"
 
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| rowspan="2" | 5
 
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| 6-Feb
 
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| <!--Reading-->
 
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|
 
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* Week 4 work session<br />
 
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| rowspan="2" | [[Week 5]]<br /><br />(due 12:01am 2/15)<br /><br />[[Class Journal Week 5]]<br />
 
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|- style="vertical-align:bottom;"
 
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| 8-Feb
 
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| <!--Reading-->
 
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|
 
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Introduction to biological databases (part 3)
 
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* Terminology, types, evaluation, four "Gold Standard" databases
 
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* A closer look at evaluating biological databases
 
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* DataONE: Data sharing
 
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* Presentation Guidelines<br />
 
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|- style="vertical-align:bottom;"
 
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| rowspan="2" | 6
 
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| 13-Feb
 
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| <!--Reading-->
 
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|
 
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* Database presentations part 1
 
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| rowspan="2" | [[Week 6]]<br /><br />(due 12:01am 2/22)<br /><br />[[Class Journal Week 6]]<br />
 
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|- style="vertical-align:bottom;"
 
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| 15-Feb
 
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| <!--Reading-->
 
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|
 
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* Database presentations part 2
 
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|- style="background-color:#dae8fc;"
 
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| colspan="5" | '''Part 2: Going Deeper (Gene Expression Data and Relational Databases)'''
 
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|-
 
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|- style="vertical-align:bottom;"
 
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| rowspan="2" | 7
 
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| 20-Feb
 
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| <!--Reading-->
 
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|
 
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* Human Genome Project to 'omics era<br />
 
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| rowspan="2" | No Week 7 Assignment
 
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|- style="vertical-align:bottom;"
 
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| 22-Feb
 
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| <!--Reading-->
 
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|
 
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* Review Week 6 assignment
 
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|- style="vertical-align:bottom; background-color:#e5fee8;"
 
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| rowspan="2" | Spring Break
 
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| 27-Feb
 
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| rowspan="2" colspan="3" | No class
 
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|- style="vertical-align:bottom; background-color:#e5fee8;"
 
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| 29-Feb
 
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|- style="vertical-align:bottom;"
 
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| rowspan="2" | 8
 
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| 5-Mar
 
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| <!--Reading-->
 
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|
 
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* More about 'omics analysis<br />
 
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| rowspan="2" | [[Week 8]]<br /><br />(due 12:01am 3/14)<br /><br />[[Class Journal Week 8]]<br />
 
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|- style="vertical-align:bottom;"
 
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| 7-Mar
 
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| <!--Reading-->
 
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|
 
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* Begin transcriptomic analysis (part 1)<br />
 
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|- style="vertical-align:bottom;"
 
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| rowspan="2" | 9
 
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| 12-Mar
 
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| <!--Reading-->
 
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|
 
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* Transcriptomic analysis (part 2)<br />
 
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| rowspan="2" | [[Week 9]]<br /><br />(due 12:01am 3/21)<br /><br />[[Class Journal Week 9]]<br />
 
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|- style="vertical-align:bottom;"
 
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| 14-Mar
 
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| <!--Reading-->
 
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|
 
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* Transcriptomic analysis (part 3)
 
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|- style="vertical-align:bottom;"
 
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| rowspan="2" | 10
 
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| 19-Mar
 
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| <!--Reading-->
 
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|
 
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* Transcriptomic analysis (part 4)<br />
 
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| rowspan="2" | [[Week 10]]<br /><br />(due 12:01am 3/26, note Tuesday due date)<br /><br />[[Class Journal Week 10]]<br />
 
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|- style="vertical-align:bottom;"
 
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| 21-Mar
 
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| <!--Reading-->
 
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|
 
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* Transcriptomic analysis (part 5)
 
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* Group requests due in class<br />
 
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|- style="background-color:#dae8fc;"
 
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| colspan="5" | '''Part 3: Integrating for Research (GRNsight Gene Expression Database Project)'''
 
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|-
 
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|- style="vertical-align:bottom;"
 
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| 11
 
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| 26-Mar
 
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| <!--Reading-->
 
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|
 
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Begin Database Project
 
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* Team assignments
 
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* Overview of project
 
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* Work session to create Team wiki pages<br />
 
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| rowspan="2" | [[Week 11]]<br /><br />(due 12:01am 4/4)
 
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|- style="vertical-align:bottom; background-color:#e5fee8;"
 
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| Easter
 
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| 28-Mar
 
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| colspan="2" | No class
 
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|- style="vertical-align:bottom;"
 
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| rowspan="2" | 12
 
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| 2-Apr
 
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| <!--Reading-->
 
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|
 
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* Literature searching and annotated bibliographies<br />
 
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| rowspan="2" | [[Week 12]]<br /><br />(due 12:01am 4/11)<br />
 
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|- style="vertical-align:bottom;"
 
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| 4-Apr
 
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| <!--Reading-->
 
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| * Journal club presentations<br />
 
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|- style="vertical-align:bottom;"
 
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| rowspan="2" | 13
 
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| 9-Apr
 
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| <!--Reading-->
 
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|
 
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* Status report
 
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* Work session
 
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| rowspan="2" | [[Week 13]]<br /><br />(due 12:01am 4/18)<br />
 
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|- style="vertical-align:bottom;"
 
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| 11-Apr
 
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| <!--Reading-->
 
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|
 
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* Status report
 
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* Work session
 
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|- style="vertical-align:bottom;"
 
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| rowspan="2" | 14
 
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| 16-Jan
 
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| <!--Reading-->
 
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|
 
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* Status report
 
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* Work session
 
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| rowspan="2" | [[Week 14]]<br /><br />(due 12:01am 4/25)<br />
 
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|- style="vertical-align:bottom;"
 
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| 18-Apr
 
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| <!--Reading-->
 
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|
 
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* Status report
 
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* Work session
 
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|- style="vertical-align:bottom;"
 
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| rowspan="2" | 15
 
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| 23-Apr
 
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| <!--Reading-->
 
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|
 
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* Status report
 
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* Work session
 
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| rowspan="2" | [[Week 15]]<br /><br />(due 12:00 noon 5/3)<br />
 
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|- style="vertical-align:bottom;"
 
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| 25-Apr
 
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| <!--Reading-->
 
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|
 
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* Status report
 
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* Work session
 
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|- style="vertical-align:bottom; background-color:#ffccc9;"
 
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| rowspan="2" | Finals
 
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| 2-May
 
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|
 
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| '''Final Presentations  11:00am'''<br />
 
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| rowspan="2" |
 
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|- style="vertical-align:bottom; background-color:#ffccc9;"
 
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| 3-May
 
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|
 
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| '''Project Deliverables Due 12:00 noon'''<br />
 
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|}
 

Latest revision as of 14:49, 16 January 2024

Kam D. Dahlquist, Ph.D.

Contact Information

Professor
Department of Biology 
Loyola Marymount University 
1 LMU Drive, MS 8888 
Los Angeles, CA 90045-2659 
Tel: 310-338-7697 
Fax: 310-338-5317
E-mail: kdahlquist at lmu dot edu
Office: FEA 289 
Lab: FEA 263

Office Hours (Spring 2024)

Mondays 2:00-3:30 PM, Tuesdays 3:15-4:45 PM and by appointment. See the course Brightspace page for a link to my Calendly to make an in-person or Zoom appointment.

For more information about me, please see my web pages:

Education

  • Ph.D., University of California, Santa Cruz, Molecular, Cellular, and Developmental Biology Program, March 2000
  • B.A., Pomona College, Claremont, California, Biology, cum laude, May 1993
  • Study Abroad Program, University College, Oxford University, Oxford, England, Specialized tutorial in Philosophy of Science, Fall 1991

Work Experience

  • Professor, Department of Biology, Loyola Marymount University, Los Angeles, California, 2017-present
  • Chair, Department of Biology, Loyola Marymount University, Los Angeles, California, 2020-2023
  • Affiliate Faculty, Bioethics Institute, Loyola Marymount University, Los Angeles, California, 2013-present
  • William F. McLaughlin Chair of Biology, 2010–2012
  • Associate Professor, Department of Biology, Loyola Marymount University, Los Angeles, California, 2009–2017
  • Assistant Professor, Department of Biology, Loyola Marymount University, Los Angeles, California, 2005–2009,
  • Assistant Professor, Department of Biology, Vassar College, Poughkeepsie, New York, 2003–2005
  • Postdoctoral Fellow, Gladstone Institute of Cardiovascular Disease, University of California, San Francisco, 2000–2003
  • Adjunct Lecturer, Department of Biology, Santa Clara University, Santa Clara, California, Spring 2000
  • Visiting Researcher, Department of Structural Biology, Stanford University, Stanford, California, 1997–2000
  • Research Assistant, Department of Biology, University of California, Santa Cruz, California, 1994–1997

Publications

See the Dahlquist Lab Publications page or my Google Scholar profile.

Software and Datasets

  • GRNmap (Gene Regulatory Network Modeling and Parameter Estimation)
  • GRNsight (Web Application and Service for Visualizing Models of Gene Regulatory Networks)
  • NCBI Gene Expression Omnibus Series GSE83656 Global transcriptional response of wild type and transcription factor deletion strains of Saccharomyces cerevisiae to the environmental stress of cold shock and subsequent recovery

Personal Interests and Hobbies

  • Cooking and baking
  • Reading science fiction
  • Dance
  • Needlework
    • cross stitch
    • needlepoint

BioDB Home page

LMU home page

Sandbox

  1. Item 1
  2. Item 2
    • sub-item 2


New wiki page

Kdahlquist Week 2

Week 1

LMU home page

Level 1

Level 2

Level 3

  • bullet point 1
  • bullet point 2
  • bullet point 3
    • sub bullet
      • sub sub bullet
  1. number 1
  2. nunber 2
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    • sub bullet of number 3

Template:Kdahlquist

stuff I want to appear when I invoke the template

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