Difference between revisions of "MSymond1 Week 10"
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[[media: Symonds_week_10Golist.zip]] | [[media: Symonds_week_10Golist.zip]] | ||
[[media:Symonds_Miller_STEM_Presentation.pptx]] | [[media:Symonds_Miller_STEM_Presentation.pptx]] | ||
| − | #I chose profile | + | #I chose profile 9 because it has very dynamic lines and a wide range of values across all of the lines. |
| + | #*There are 200 genes assigned to this profile | ||
| + | #*There are 60.3 genes expected to belong to this profile | ||
| + | #*The p-value for this profile is 3.1E-48 | ||
| + | #*28 GO terms are associated with a p-value of less than .05, and 4 GO terms are associated with a p-value of less than .05 | ||
| + | #**vesicle-mediated transport (GO:0016192): A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. | ||
| + | #**Golgi apparatus (GO:0005794): A membrane-bound cytoplasmic organelle of the endomembrane system that further processes the core oligosaccharides (e.g. N-glycans) added to proteins in the endoplasmic reticulum and packages them into membrane-bound vesicles. The Golgi apparatus operates at the intersection of the secretory, lysosomal, and endocytic pathways. | ||
| + | #**cytoplasmic translation (GO:0002181): The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein. | ||
| + | #**protein transport (GO:0015031): The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| + | #**ribosomal small subunit assembly (GO:0000028): The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the small ribosomal subunit. | ||
| + | #**transaminase activity (GO:0008483): Combining with the neurotransmitter dopamine and activating adenylate cyclase via coupling to Gi/Go to initiate a change in cell activity. | ||
Revision as of 17:38, 25 March 2024
media:Symonds_Week10_Profiles.zip media: Symonds_week_10Golist.zip media:Symonds_Miller_STEM_Presentation.pptx
- I chose profile 9 because it has very dynamic lines and a wide range of values across all of the lines.
- There are 200 genes assigned to this profile
- There are 60.3 genes expected to belong to this profile
- The p-value for this profile is 3.1E-48
- 28 GO terms are associated with a p-value of less than .05, and 4 GO terms are associated with a p-value of less than .05
- vesicle-mediated transport (GO:0016192): A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
- Golgi apparatus (GO:0005794): A membrane-bound cytoplasmic organelle of the endomembrane system that further processes the core oligosaccharides (e.g. N-glycans) added to proteins in the endoplasmic reticulum and packages them into membrane-bound vesicles. The Golgi apparatus operates at the intersection of the secretory, lysosomal, and endocytic pathways.
- cytoplasmic translation (GO:0002181): The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
- protein transport (GO:0015031): The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
- ribosomal small subunit assembly (GO:0000028): The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the small ribosomal subunit.
- transaminase activity (GO:0008483): Combining with the neurotransmitter dopamine and activating adenylate cyclase via coupling to Gi/Go to initiate a change in cell activity.
