Difference between revisions of "Nstojan1 Week 12"

From LMU BioDB 2024
Jump to navigation Jump to search
(deleted syntax)
(added questions)
Line 1: Line 1:
 
+
#Make a list of at least 10 biological terms for which you did not know the definitions when you first read the article. Define each of the terms. You can use the glossary in any molecular biology, cell biology, or genetics text book as a source for definitions, or you can use one of many available online biological dictionaries (links below). Cite your sources for the definitions by providing the proper citation (for a book) or the URL to the page with the definition for online sources. Each definition must have it's own citation, to a book or URL. Make an in text citation of the (name, year) format next to the definition, and then list the full citation in the References section of your journal page.
#Is the article available online-only or both in print and online? Look on the journal website for a “subscription” link. If that page talks about subscribing to the print edition, then it is available in print. If not, it is available online-only.
+
#*Online Biological Dictionaries
#What organization is the publisher of the journal?
+
#**Web sites
#What type of organization is it?
+
#***biology-online.org dictionary
#Is the publisher for-profit or non-profit?
+
#***Gene Ontology
#Is the publisher a scientific society (some scientific societies partner with a for-profit publisher, some act as their own non-profit publisher)
+
#***NCI Dictionary of Cancer Terms
#Does the publisher belong to the Open Access Publishers Association?
+
#**eBooks
#What country is the journal published in?
+
#***Oxford Dictionary of Biochemistry and Molecular Biology eBook
#How long has the journal been in operaion? (e.g., browse the archive for the earliest article published)
+
#***Dictionary of Biology Oxford Reference eBook
#Are the articles in this journal peer-reviewed?
+
#***Dictionary of Cell and Molecular Biology eBook
#Provide a link to the scientific advisory board/editorial board of the journal.
+
#***Dictionary of Genetics Oxford Reference eBook
#What is the journal impact factor? (Look to see if it is provided on the journal home page. Alternately, it may be found through a Google Search.)
+
Answer the following questions about your article. Your answers need to be in YOUR OWN WORDS, not copied straight from the article. It is not acceptable to copy another student's answers either. Even if you work together to understand the article, your individual entries need to be in your own words.
#On what date was the article submitted?
+
What is the main result presented in this paper?
#On what date was the article accepted?
+
What is the importance or significance of this work?
#Did the article undergo any revisions before acceptance?
+
What were the limitations in previous studies that led them to perform this work?
#When was the article published?
+
How did they treat the yeast cells (what experiment were they doing?)
#What is the approximate elapsed time between submission and publication?
+
What strain(s) of yeast did they use? Were the strain(s) haploid or diploid?
#What are the institutions with which the authors are affiliated?
+
What media did they grow them in? What temperature? What type of incubator? For how long?
#Have the authors published other articles on this subject? (How will you find this out?)
+
What controls did they use?
#Is there a conflict of interest for any of the authors?
+
How many replicates did they perform per treatment or timepoint?
#Are the data associated with this article available? If so, provide a link to the dataset.
+
What method did they use to prepare the RNA, label it and hybridize it to the microarray?
#Perform a prospective search on your article in the Web of Science and answer the following (note that LMU pays a subscription for this service, so you may not be able to access it off campus):
+
What mathematical/statistical method did they use to analyze the data?
#*How many articles does this article cite?
+
Are the data publicly available for download? From which web site?
#*How many articles cite this article?
+
Briefly state the result shown in each of the figures and tables, not just the ones you are presenting.
 +
What do the X and Y axes represent (if applicable)?
 +
How were the measurements made?
 +
What trends are shown by the plots and what conclusions can you draw from the data?
 +
How does this work compare with previous studies?
 +
What are the important implications of this work?
 +
What future directions should the authors take?
 +
Give a critical evaluation of how well you think the authors supported their conclusions with the data they showed. Are there any major flaws to the paper?

Revision as of 13:25, 4 April 2024

  1. Make a list of at least 10 biological terms for which you did not know the definitions when you first read the article. Define each of the terms. You can use the glossary in any molecular biology, cell biology, or genetics text book as a source for definitions, or you can use one of many available online biological dictionaries (links below). Cite your sources for the definitions by providing the proper citation (for a book) or the URL to the page with the definition for online sources. Each definition must have it's own citation, to a book or URL. Make an in text citation of the (name, year) format next to the definition, and then list the full citation in the References section of your journal page.
    • Online Biological Dictionaries
      • Web sites
        • biology-online.org dictionary
        • Gene Ontology
        • NCI Dictionary of Cancer Terms
      • eBooks
        • Oxford Dictionary of Biochemistry and Molecular Biology eBook
        • Dictionary of Biology Oxford Reference eBook
        • Dictionary of Cell and Molecular Biology eBook
        • Dictionary of Genetics Oxford Reference eBook

Answer the following questions about your article. Your answers need to be in YOUR OWN WORDS, not copied straight from the article. It is not acceptable to copy another student's answers either. Even if you work together to understand the article, your individual entries need to be in your own words. What is the main result presented in this paper? What is the importance or significance of this work? What were the limitations in previous studies that led them to perform this work? How did they treat the yeast cells (what experiment were they doing?) What strain(s) of yeast did they use? Were the strain(s) haploid or diploid? What media did they grow them in? What temperature? What type of incubator? For how long? What controls did they use? How many replicates did they perform per treatment or timepoint? What method did they use to prepare the RNA, label it and hybridize it to the microarray? What mathematical/statistical method did they use to analyze the data? Are the data publicly available for download? From which web site? Briefly state the result shown in each of the figures and tables, not just the ones you are presenting. What do the X and Y axes represent (if applicable)? How were the measurements made? What trends are shown by the plots and what conclusions can you draw from the data? How does this work compare with previous studies? What are the important implications of this work? What future directions should the authors take? Give a critical evaluation of how well you think the authors supported their conclusions with the data they showed. Are there any major flaws to the paper?