Difference between revisions of "Hivanson Week 15"
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I helped Katie and Charlotte with generating the Bonferroni and B&H p-values. All of us worked on a shared Excel file to complete the work. Steps laid out on [[somewhere]]. I ran the sanity check to find the ideal B&H p-value (significance of ~25%). | I helped Katie and Charlotte with generating the Bonferroni and B&H p-values. All of us worked on a shared Excel file to complete the work. Steps laid out on [[somewhere]]. I ran the sanity check to find the ideal B&H p-value (significance of ~25%). | ||
I made the expression table to send to the coder/designers. | I made the expression table to send to the coder/designers. | ||
| − | An error that was encountered when sending the expression table | + | An error that was encountered when sending the expression table was that I accidentally copy-pasted CHP data for timepoint 6 trial 2 into the spot for CHP timepoint 6 trial 3. This was present in the ANOVA Excel, too. This was quickly ameliorated and the sanity check values were readjusted for the CHP data. |
I helped Charlotte and Katie run the Stem analysis. Steps outlines [[somewhere]] | I helped Charlotte and Katie run the Stem analysis. Steps outlines [[somewhere]] | ||
I used GRNsight using the first 23 most significant transcription factors from profile 41 from Yeastract. This was not used in the final project. | I used GRNsight using the first 23 most significant transcription factors from profile 41 from Yeastract. This was not used in the final project. | ||
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| + | For the final presentation, I made the flow chart, the outline, the Sha et al. background, put together and interpreted the GRNmaps, and drew the comparisons from our data to that of Sha et al. I also helped work on the future directions and conclusion, and finalized the references list. | ||
Revision as of 10:16, 3 May 2024
Electronic laboratory notebook for weeks 14-15
I helped Katie and Charlotte with generating the Bonferroni and B&H p-values. All of us worked on a shared Excel file to complete the work. Steps laid out on somewhere. I ran the sanity check to find the ideal B&H p-value (significance of ~25%). I made the expression table to send to the coder/designers. An error that was encountered when sending the expression table was that I accidentally copy-pasted CHP data for timepoint 6 trial 2 into the spot for CHP timepoint 6 trial 3. This was present in the ANOVA Excel, too. This was quickly ameliorated and the sanity check values were readjusted for the CHP data.
I helped Charlotte and Katie run the Stem analysis. Steps outlines somewhere
I used GRNsight using the first 23 most significant transcription factors from profile 41 from Yeastract. This was not used in the final project.
For the final presentation, I made the flow chart, the outline, the Sha et al. background, put together and interpreted the GRNmaps, and drew the comparisons from our data to that of Sha et al. I also helped work on the future directions and conclusion, and finalized the references list.
