Difference between revisions of "Yeast Beasts Deliverables"
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| − | # Organized Team deliverables wiki page with table of contents | + | # [[Yeast_Beasts_Deliverables|Organized Team deliverables wiki page with table of contents]] |
| − | # Group Report (''.docx'' or ''.pdf'' file) | + | # Group Report (''.docx'' or ''.pdf'' file) [[media:Yeast_Beasts_Deliverable.pdf|Report]] |
| − | # Individual statements of work, assessments, reflections (wiki page, ''.docx'', ''.pdf'', or e-mailed to Dr. Dahlquist) | + | # Individual statements of work, assessments, reflections (wiki page, ''.docx'', ''.pdf'', or e-mailed to Dr. Dahlquist) [[media:Symonds Ind. Assessment-Reflection.docx|Dean's reflection]] |
# Group PowerPoint presentation (given on Thursday, May 2, ''.pptx'' or ''.pdf'' file) [[Media:Yeast_Beasts_Presentation.pdf|Presentation]] | # Group PowerPoint presentation (given on Thursday, May 2, ''.pptx'' or ''.pdf'' file) [[Media:Yeast_Beasts_Presentation.pdf|Presentation]] | ||
| − | # Sample-data relationship table in Excel (''.xlsx'') | + | # Sample-data relationship table in Excel (''.xlsx'') [[Media:Sample_Data_Table.xlsx | Sample-data Relationship Table]] |
| − | # Excel spreadsheet with ANOVA results/stem formatting (''.xlsx'') [[ANOVA_STEM.xlsx|ANOVA and STEM Spreadsheet]] | + | # Excel spreadsheet with ANOVA results/stem formatting (''.xlsx'') [[Media:ANOVA_STEM.xlsx | ANOVA and STEM Spreadsheet]] |
| − | # PowerPoint of ANOVA table, screenshots of stem results (''.pptx''), screenshot of black and white GRNsight input network and colored GRNmap/GRNsight output networks | + | # PowerPoint of ANOVA table, screenshots of stem results (''.pptx''), screenshot of black and white GRNsight input network and colored GRNmap/GRNsight output networks [[Media:ANOVAslides.pdf | PPT of ANOVA, STEM, and Networks]] |
| − | # Gene List and GO List files from each significant profile (''.txt'' compressed together in a ''.zip'' file) | + | # Gene List and GO List files from each significant profile (''.txt'' compressed together in a ''.zip'' file) [https://lmu.app.box.com/file/1512445828707 GO List Zipped Files] and [https://lmu.app.box.com/file/1512445314285 Gene List Zipped Files] |
| − | # YEASTRACT "rank by TF" results (''.xlsx'') | + | # YEASTRACT "rank by TF" results (''.xlsx'') [https://lmu.app.box.com/file/1513580824058 YEASTRACT Results] |
| − | # GRNmap input workbook (''.xlsx'') [[media:GRNmap_930PM.xlsx|GRNmap | + | # GRNmap input workbook (''.xlsx'') [[media:GRNmap_930PM.xlsx|GRNmap Input Workbook]] |
| − | # GRNmap output workbook (''.xlsx'') and output plots (''.jpg'') zipped together [https://lmu.box.com/s/rathfd4jhdqdjzuci4kdagmptq1jbxeb link to | + | # GRNmap output workbook (''.xlsx'') and output plots (''.jpg'') zipped together [https://lmu.box.com/s/rathfd4jhdqdjzuci4kdagmptq1jbxeb link to Box with GRNmap Output] |
# MS Access database, including all tables (''.accdb'') [https://lmu.box.com/s/2mcetil8n7vxzwe100avt5yhmc7psuh5 Database] | # MS Access database, including all tables (''.accdb'') [https://lmu.box.com/s/2mcetil8n7vxzwe100avt5yhmc7psuh5 Database] | ||
| − | # ReadMe for the database that describes the design of the database, references the sources of the data, and has a [https://www.quackit.com/microsoft_access/microsoft_access_2016/howto/how_to_create_a_database_diagram_in_access_2016.cfm database schema diagram] (''.docx'', ''.pdf'') [https://lmu.box.com/s/0j6y9p1mrb3dji8wuvn8zhfwrb6lpo97 | + | # ReadMe for the database that describes the design of the database, references the sources of the data, and has a [https://www.quackit.com/microsoft_access/microsoft_access_2016/howto/how_to_create_a_database_diagram_in_access_2016.cfm database schema diagram] (''.docx'', ''.pdf'') [https://lmu.box.com/s/0j6y9p1mrb3dji8wuvn8zhfwrb6lpo97 Database Diagram] |
# Query design for populating a GRNmap input workbook from the database (screenshot of MS Access; or SQL code, ''.txt'') [https://lmu.box.com/s/y6x97kqcjlxfezhnbpvck4h4oe4pm366 Query Designs] | # Query design for populating a GRNmap input workbook from the database (screenshot of MS Access; or SQL code, ''.txt'') [https://lmu.box.com/s/y6x97kqcjlxfezhnbpvck4h4oe4pm366 Query Designs] | ||
# Electronic notebook corresponding to these the microarray results files ([[Week 13]], [[Week 14]], and [[Week 15]]) to support ''reproducible research'' so that all manipulations of the data and files are documented so that someone else could begin with your starting file, follow the protocol, and obtain your results. | # Electronic notebook corresponding to these the microarray results files ([[Week 13]], [[Week 14]], and [[Week 15]]) to support ''reproducible research'' so that all manipulations of the data and files are documented so that someone else could begin with your starting file, follow the protocol, and obtain your results. | ||
Latest revision as of 10:58, 3 May 2024
- Organized Team deliverables wiki page with table of contents
- Group Report (.docx or .pdf file) Report
- Individual statements of work, assessments, reflections (wiki page, .docx, .pdf, or e-mailed to Dr. Dahlquist) Dean's reflection
- Group PowerPoint presentation (given on Thursday, May 2, .pptx or .pdf file) Presentation
- Sample-data relationship table in Excel (.xlsx) Sample-data Relationship Table
- Excel spreadsheet with ANOVA results/stem formatting (.xlsx) ANOVA and STEM Spreadsheet
- PowerPoint of ANOVA table, screenshots of stem results (.pptx), screenshot of black and white GRNsight input network and colored GRNmap/GRNsight output networks PPT of ANOVA, STEM, and Networks
- Gene List and GO List files from each significant profile (.txt compressed together in a .zip file) GO List Zipped Files and Gene List Zipped Files
- YEASTRACT "rank by TF" results (.xlsx) YEASTRACT Results
- GRNmap input workbook (.xlsx) GRNmap Input Workbook
- GRNmap output workbook (.xlsx) and output plots (.jpg) zipped together link to Box with GRNmap Output
- MS Access database, including all tables (.accdb) Database
- ReadMe for the database that describes the design of the database, references the sources of the data, and has a database schema diagram (.docx, .pdf) Database Diagram
- Query design for populating a GRNmap input workbook from the database (screenshot of MS Access; or SQL code, .txt) Query Designs
- Electronic notebook corresponding to these the microarray results files (Week 13, Week 14, and Week 15) to support reproducible research so that all manipulations of the data and files are documented so that someone else could begin with your starting file, follow the protocol, and obtain your results.
