Difference between revisions of "Hivanson and Nstojan1 Week 3"
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(→Other Information:: formatting around the expasy screenshot) |
(→IMD3: expasy is causing little issues idk why i didn't just preview last time.) |
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| Line 14: | Line 14: | ||
#What is the DNA sequence of your gene? | #What is the DNA sequence of your gene? | ||
#What is the protein sequence corresponding to your gene? | #What is the protein sequence corresponding to your gene? | ||
| − | [[Image:IMD3 ExPasy.png | + | [[Image:IMD3 ExPasy.png|700px]] |
| − | Reading frame 1 encodes the IMD3 protein sequence: | + | Reading frame 1 encodes the IMD3 protein sequence: |
| + | |||
| + | MAAVRDYKTALEFAKSLPRLDGLSVQELMDSKTRGGLTYNDFLVLPGLVD | ||
| + | FPSSEVSLQTKLTRNITLNTPFVSSPMDTVTESEMAIFMALLGGIGFIHH | ||
| + | NCTPEDQADMVRRVKNYENGFINNPIVISPTTTVGEAKSMKERFGFSGFP | ||
| + | VTEDGKRNGKLMGIVTSRDIQFVEDNSLLVQDVMTKNPVTGAQGITLSEG | ||
| + | NEILKKIKKGKLLIVDDNGNLVSMLSRTDLMKNQNYPLASKSATTKQLLC | ||
| + | GAAIGTIDADKERLRLLVEAGLDVVILDSSQGNSIFQLNMIKWIKETFPD | ||
| + | LEIIAGNVATREQAANLIAAGADGLRIGMGSGSICITQEVMACGRPQGTA | ||
| + | VYNVCEFANQFGIPCMADGGVQNIGHITKALALGSSTVMMGGMLAGTTES | ||
| + | PGEYFYQDGKRLKAYRGMGSIDAMQKTGTKGNASTSRYFSESDSVLVAQG | ||
| + | VSGAVVDKGSIKKFIPYLYNGLQHSCQDIGYKSLTLLKENVQSGKVRFEF | ||
| + | RTASAQLEGGVHNLHSYEKRLHN- | ||
#What is the function of your gene? | #What is the function of your gene? | ||
#What was different about the information provided about your gene in each of the parent databases? | #What was different about the information provided about your gene in each of the parent databases? | ||
Revision as of 18:16, 31 January 2024
IMD3
Summary of Function:
Other Information:
- What is the standard name, systematic name, and name description for your gene (from SGD)?
- Standard name: IMD3
- Systematic name: YLR432W
- Name description: IMP Dehydrogenase
- What is the gene ID (identifier) for your gene in all four databases (SGD, NCBI Gene, Ensembl, UniProt)?
- What is the DNA sequence of your gene?
- What is the protein sequence corresponding to your gene?
Reading frame 1 encodes the IMD3 protein sequence:
MAAVRDYKTALEFAKSLPRLDGLSVQELMDSKTRGGLTYNDFLVLPGLVD FPSSEVSLQTKLTRNITLNTPFVSSPMDTVTESEMAIFMALLGGIGFIHH NCTPEDQADMVRRVKNYENGFINNPIVISPTTTVGEAKSMKERFGFSGFP VTEDGKRNGKLMGIVTSRDIQFVEDNSLLVQDVMTKNPVTGAQGITLSEG NEILKKIKKGKLLIVDDNGNLVSMLSRTDLMKNQNYPLASKSATTKQLLC GAAIGTIDADKERLRLLVEAGLDVVILDSSQGNSIFQLNMIKWIKETFPD LEIIAGNVATREQAANLIAAGADGLRIGMGSGSICITQEVMACGRPQGTA VYNVCEFANQFGIPCMADGGVQNIGHITKALALGSSTVMMGGMLAGTTES PGEYFYQDGKRLKAYRGMGSIDAMQKTGTKGNASTSRYFSESDSVLVAQG VSGAVVDKGSIKKFIPYLYNGLQHSCQDIGYKSLTLLKENVQSGKVRFEF RTASAQLEGGVHNLHSYEKRLHN-
- What is the function of your gene?
- What was different about the information provided about your gene in each of the parent databases?
- Were there differences in content, the information or data itself?
- Were there differences in presentation of the information?
- Why did you choose your particular gene? i.e., why is it interesting to you and your partner?
- Include an image related to your gene (be careful that you do not violate any copyright restrictions!)
- Please make the image something scientific (not like the random images seen on the SGD blog posts).
- If a 3D structure of the protein your gene encodes is available, you can choose to embed a rotating image of the structure on your page using the FirstGlance in Jmol software. This is optional, a different static image would be OK, too.
- The NCBI Structure database and RSCB Protein Databank also display structures.
