Difference between revisions of "Hivanson and Nstojan1 Week 3"
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(→Other Information:: oops i had too many brackets on the links for q2) |
(→Other Information:: i added a colon after each of the database names on q2) |
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#*Name description: IMP Dehydrogenase | #*Name description: IMP Dehydrogenase | ||
#What is the gene ID (identifier) for your gene in all four databases (SGD, NCBI Gene, Ensembl, UniProt)? | #What is the gene ID (identifier) for your gene in all four databases (SGD, NCBI Gene, Ensembl, UniProt)? | ||
| − | #*[https://www.yeastgenome.org/locus/S000004424 SGD] | + | #*[https://www.yeastgenome.org/locus/S000004424 SGD:] |
| − | #*[https://www.ncbi.nlm.nih.gov/gene/851152 NCBI Gene Database] | + | #*[https://www.ncbi.nlm.nih.gov/gene/851152 NCBI Gene Database:] |
| − | #*[https://useast.ensembl.org/Saccharomyces_cerevisiae/Gene/Summary?db=core;g=YLR432W;r=XII:1002557-1004128;t=YLR432W_mRNA Ensembl] | + | #*[https://useast.ensembl.org/Saccharomyces_cerevisiae/Gene/Summary?db=core;g=YLR432W;r=XII:1002557-1004128;t=YLR432W_mRNA Ensembl:] |
| − | #*[https://www.uniprot.org/uniprotkb/P50095/entry UniProt] | + | #*[https://www.uniprot.org/uniprotkb/P50095/entry UniProt:] |
#What is the DNA sequence of your gene? | #What is the DNA sequence of your gene? | ||
#What is the protein sequence corresponding to your gene? | #What is the protein sequence corresponding to your gene? | ||
Revision as of 17:57, 31 January 2024
IMD3
Summary of Function:
Other Information:
- What is the standard name, systematic name, and name description for your gene (from SGD)?
- Standard name: IMD3
- Systematic name: YLR432W
- Name description: IMP Dehydrogenase
- What is the gene ID (identifier) for your gene in all four databases (SGD, NCBI Gene, Ensembl, UniProt)?
- What is the DNA sequence of your gene?
- What is the protein sequence corresponding to your gene?
- Go to the ExPASy tool and translate the DNA sequence of your gene. Which reading frame encodes the protein sequence? Take a screenshot of your results, display it on your wiki page, and state which frame it is.
- What is the function of your gene?
- What was different about the information provided about your gene in each of the parent databases?
- Were there differences in content, the information or data itself?
- Were there differences in presentation of the information?
- Why did you choose your particular gene? i.e., why is it interesting to you and your partner?
- Include an image related to your gene (be careful that you do not violate any copyright restrictions!)
- Please make the image something scientific (not like the random images seen on the SGD blog posts).
- If a 3D structure of the protein your gene encodes is available, you can choose to embed a rotating image of the structure on your page using the FirstGlance in Jmol software. This is optional, a different static image would be OK, too.
- The NCBI Structure database and RSCB Protein Databank also display structures.
