MSymond1 Week 13

Progress Report

Milestone 2 was completed because we both already had the necessary softwares for the assignment

Milestone 3 was the most time consuming and most difficult of all the milestones
The gene ID table from yeastmine could not yet be acquired because I do not know how to access a full length table from the website of the entire yeast genome or download it from the website
The Gene expression table is being made by the data analysts, therefore we do not have access to it yet
After importing the data for the network table, it needed some cleaning up
YPD is rich medium, can be deleted
The numbers at top row could be deleted, because nor me or Dr. Dahlquist had an idea what it is
We attempted to convert the p values to either 0 or 1, 1 if p<.001 and 0 if p>.001
It didn’t work on my computer trying to do the syntax to convert the p values, and it didn’t on Dahlquist’s computer either, but it did on Andrew’s so we just used his
The rest of the data tables do not require much adjusting if at all. Therefore they should be more simple to import into the database
I attempted to import the data from the degradation rates and the production rates tables into excel, however it did not separate any of the rows or columns, I will likely have to ask my professor how to troubleshoot this issue.