Difference between revisions of "Taur.vil Week 4"
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'''Code''' | '''Code''' | ||
cat infA-E.coli-K12.txt | sed "s/cat[at]at/ <-10box> & <\/-10box> /g" | sed "s/................. <-10box>/ <\/-35box> &/g" |sed "s/...... <\/-35box>/ <-35box> &/g" | sed "s/ <-10box> ...... <\/-10box> ...../& <tss> /g" | sed "s/ <tss> ./& <\/tss> /g" | sed "s/gagg/ <rbs> & <\/rbs>\n/g" | sed "2s/atg/ <start_codon> & <\/start_codon> /1" | sed -r "2s/<\/start_codon> .{3}*t[ag][ag]/& <\/stop_codon> /g" | sed "2s/... <\/stop_codon>/ <stop_codon> &/g" | sed "2s/aaaaggt/ <terminator> &/g" | sed "2s/tttt..../& <\/terminator> /2" | cat infA-E.coli-K12.txt | sed "s/cat[at]at/ <-10box> & <\/-10box> /g" | sed "s/................. <-10box>/ <\/-35box> &/g" |sed "s/...... <\/-35box>/ <-35box> &/g" | sed "s/ <-10box> ...... <\/-10box> ...../& <tss> /g" | sed "s/ <tss> ./& <\/tss> /g" | sed "s/gagg/ <rbs> & <\/rbs>\n/g" | sed "2s/atg/ <start_codon> & <\/start_codon> /1" | sed -r "2s/<\/start_codon> .{3}*t[ag][ag]/& <\/stop_codon> /g" | sed "2s/... <\/stop_codon>/ <stop_codon> &/g" | sed "2s/aaaaggt/ <terminator> &/g" | sed "2s/tttt..../& <\/terminator> /2" | ||
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'''Output''' | '''Output''' | ||
ttttcaccacaagaatgaatgttttcggcacatttctccccagagtgttataattgcggtcgcagagttggttacgctcattaccccgctgccgataaggaatttttcgcgtcaggtaacgcccatcgtttatctcaccgctcccttatacgttgcgcttttggtgcggcttagccgtgtgttttcggagtaatgtgccgaacctgtttgttgcgatttagcgcgcaaatc <-35box> tttact </-35box> tatttacagaacttcgg <-10box> cattat </-10box> cttgc <tss> c </tss> ggttcaaattacggtagtgatacccca <rbs> gagg </rbs> | ttttcaccacaagaatgaatgttttcggcacatttctccccagagtgttataattgcggtcgcagagttggttacgctcattaccccgctgccgataaggaatttttcgcgtcaggtaacgcccatcgtttatctcaccgctcccttatacgttgcgcttttggtgcggcttagccgtgtgttttcggagtaatgtgccgaacctgtttgttgcgatttagcgcgcaaatc <-35box> tttact </-35box> tatttacagaacttcgg <-10box> cattat </-10box> cttgc <tss> c </tss> ggttcaaattacggtagtgatacccca <rbs> gagg </rbs> | ||
attag <start_codon> atg </start_codon> gccaaagaagacaatattgaaatgcaaggtaccgttcttgaaacgttgcctaataccatgttccgcgtagagttagaaaacggtcacgtggttactgcacacatctccggtaaaatgcgcaaaaactacatccgcatcctgacgggcgacaaagtgactgttgaactgaccccgtacgacctgagcaaaggccgcattgtcttccgtagtcgc <stop_codon> tga </stop_codon> ttgttttaccgcctgatgggcgaagagaaagaacgagt <terminator> aaaaggtcggtttaaccggcctttttatt </terminator> ttat | attag <start_codon> atg </start_codon> gccaaagaagacaatattgaaatgcaaggtaccgttcttgaaacgttgcctaataccatgttccgcgtagagttagaaaacggtcacgtggttactgcacacatctccggtaaaatgcgcaaaaactacatccgcatcctgacgggcgacaaagtgactgttgaactgaccccgtacgacctgagcaaaggccgcattgtcttccgtagtcgc <stop_codon> tga </stop_codon> ttgttttaccgcctgatgggcgaagagaaagaacgagt <terminator> aaaaggtcggtttaaccggcctttttatt </terminator> ttat | ||
| − | 2) | + | **2)** |
Revision as of 04:11, 20 September 2013
- 1)**
Code cat infA-E.coli-K12.txt | sed "s/cat[at]at/ <-10box> & <\/-10box> /g" | sed "s/................. <-10box>/ <\/-35box> &/g" |sed "s/...... <\/-35box>/ <-35box> &/g" | sed "s/ <-10box> ...... <\/-10box> ...../& <tss> /g" | sed "s/ <tss> ./& <\/tss> /g" | sed "s/gagg/ <rbs> & <\/rbs>\n/g" | sed "2s/atg/ <start_codon> & <\/start_codon> /1" | sed -r "2s/<\/start_codon> .{3}*t[ag][ag]/& <\/stop_codon> /g" | sed "2s/... <\/stop_codon>/ <stop_codon> &/g" | sed "2s/aaaaggt/ <terminator> &/g" | sed "2s/tttt..../& <\/terminator> /2"
Output ttttcaccacaagaatgaatgttttcggcacatttctccccagagtgttataattgcggtcgcagagttggttacgctcattaccccgctgccgataaggaatttttcgcgtcaggtaacgcccatcgtttatctcaccgctcccttatacgttgcgcttttggtgcggcttagccgtgtgttttcggagtaatgtgccgaacctgtttgttgcgatttagcgcgcaaatc <-35box> tttact </-35box> tatttacagaacttcgg <-10box> cattat </-10box> cttgc <tss> c </tss> ggttcaaattacggtagtgatacccca <rbs> gagg </rbs> attag <start_codon> atg </start_codon> gccaaagaagacaatattgaaatgcaaggtaccgttcttgaaacgttgcctaataccatgttccgcgtagagttagaaaacggtcacgtggttactgcacacatctccggtaaaatgcgcaaaaactacatccgcatcctgacgggcgacaaagtgactgttgaactgaccccgtacgacctgagcaaaggccgcattgtcttccgtagtcgc <stop_codon> tga </stop_codon> ttgttttaccgcctgatgggcgaagagaaagaacgagt <terminator> aaaaggtcggtttaaccggcctttttatt </terminator> ttat
- 2)**
- As part of Biological Databases
Please Remember the Harassing of Deities is Strictly Prohibited
Never Forget Samson
