Difference between revisions of "Lena Week 8"

Revision as of 18:12, 15 October 2013

I used the 2009 version of the Vibrio cholerae Gene Database with GenMAPP.
I loaded my txt file of Vibrio cholerae, and allowed Expression Dataset Manager to convert the data.
The processed data was saved here. Media:Merrell_Compiled_Raw_Data_Vibrio_AJV.gex
The exception file was saved here. Media:Merrell_Compiled_Raw_Data_Vibrio_AJV.EX.txt
There were 772 errors due to genes not being found.
I had more errors than my partner who was using the updated version, she has 122. I think the updated version probably had a more comprehensive list of genes for Vibrio cholerae.

I customized the data set of Avg_LogFC_all with colors. Increased was set to pink and decreased was set to green. To create the criterion for increased I set the Fold Change to > 0.25 and the P Value to < 0.05. To set the criterion for decreased I set Fold Change to < -0.25 and P Value to < 0.05.

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-*I customized the data set of Avg_LogFC_all with colors.  Increased was set to pink and decreased was set to green.  To create the criterion for increased I set the Fold Change to > 0.25 and the P Value to < 0.05.
+*I customized the data set of Avg_LogFC_all with colors.  Increased was set to pink and decreased was set to green.  To create the criterion for '''increased''' I set the Fold Change to > 0.25 and the P Value to < 0.05.  To set the criterion for '''decreased''' I set Fold Change to < -0.25 and P Value to < 0.05.
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+*The .gex file was saved here.  [[Media:Merrell_Compiled_Raw_Data_Vibrio_AJV.gex]]