Difference between revisions of "HDelgadi Week 3"
From LMU BioDB 2013
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''' XMLPipeDB Match Practice ''' | ''' XMLPipeDB Match Practice ''' | ||
| − | * | + | * What Match command tallies the occurrences of the pattern GO:000916. in the 493.P_falciparum.xml file? |
The command: java -jar xmlpipedb-match-1.1.1.jar "GO:000916." <493.P_falciparum.xml. | The command: java -jar xmlpipedb-match-1.1.1.jar "GO:000916." <493.P_falciparum.xml. | ||
| − | + | * How many unique matches are there? | |
There are two unique matches. | There are two unique matches. | ||
| − | + | * How many times does each unique match appear? | |
go:0009165 appears twice and go:0009168 appears once. | go:0009165 appears twice and go:0009168 appears once. | ||
| − | + | * What information do you think the pattern GO:000916. represents? | |
| − | + | * What Match command tallies the occurrences of the pattern \"James.*\" in the 493.P_falciparum.xml file? | |
The command: java -jar xmlpipedb-match-1.1.1.jar "\"James.*\"" < 493.P_falciparum.xml. | The command: java -jar xmlpipedb-match-1.1.1.jar "\"James.*\"" < 493.P_falciparum.xml. | ||
| − | + | * How many unique matches are there? | |
There are two unique matches. | There are two unique matches. | ||
| − | + | * How many times does each unique match appear? | |
"james k.d." appears 8238 times and "james a.a." appears just once. | "james k.d." appears 8238 times and "james a.a." appears just once. | ||
#What information do you think the pattern \"James.*\" represents? | #What information do you think the pattern \"James.*\" represents? | ||
Revision as of 22:07, 12 September 2013
XMLPipeDB Match Practice
- What Match command tallies the occurrences of the pattern GO:000916. in the 493.P_falciparum.xml file?
The command: java -jar xmlpipedb-match-1.1.1.jar "GO:000916." <493.P_falciparum.xml.
- How many unique matches are there?
There are two unique matches.
- How many times does each unique match appear?
go:0009165 appears twice and go:0009168 appears once.
- What information do you think the pattern GO:000916. represents?
- What Match command tallies the occurrences of the pattern \"James.*\" in the 493.P_falciparum.xml file?
The command: java -jar xmlpipedb-match-1.1.1.jar "\"James.*\"" < 493.P_falciparum.xml.
- How many unique matches are there?
There are two unique matches.
- How many times does each unique match appear?
"james k.d." appears 8238 times and "james a.a." appears just once.
- What information do you think the pattern \"James.*\" represents?
