Difference between revisions of "HDelgadi Project Notebook"
From LMU BioDB 2013
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'''''Week 13''''' | '''''Week 13''''' | ||
| − | *'''bacteria.ensembl.org/chlamydia_trachomatis_a_har_13/Gene/Summary?g=~(Gene Database Link Pattern)''' | + | *'''bacteria.ensembl.org/chlamydia_trachomatis_a_har_13/Gene/Summary?g=~ (Gene Database Link Pattern)''' |
:I went to the Model Organism Database, EnsemblGenome which can be found through this link, http://bacteria.ensembl.org/chlamydia_trachomatis_a_har_13/Info/Index. I then clicked on the Chromosome:592980-593522 which takes me to the genes of the | :I went to the Model Organism Database, EnsemblGenome which can be found through this link, http://bacteria.ensembl.org/chlamydia_trachomatis_a_har_13/Info/Index. I then clicked on the Chromosome:592980-593522 which takes me to the genes of the | ||
:Chlamydia trachomatis A/HAR-13. I clicked on the gene ID CTA_0588 which brought me to this webpage http://bacteria.ensembl.org/chlamydia_trachomatis_a_har_13/Gene/Summary?g=CTA_0588;r=Chromosome:608460-608543;t=CTA_0588, with further description of this gene. :I replaced the gene ID in bold within this URL, http://bacteria.ensembl.org/chlamydia_trachomatis_a_har_13/Gene/Summary?g='''CTA_0588''';r=Chromosome:608460-608543;t=CTA_0588, with CTA_0578. This new URL was able to take me to the webpage particularly for this new gene CTA_0588. Hence, this URL serves as the gene database link pattern. | :Chlamydia trachomatis A/HAR-13. I clicked on the gene ID CTA_0588 which brought me to this webpage http://bacteria.ensembl.org/chlamydia_trachomatis_a_har_13/Gene/Summary?g=CTA_0588;r=Chromosome:608460-608543;t=CTA_0588, with further description of this gene. :I replaced the gene ID in bold within this URL, http://bacteria.ensembl.org/chlamydia_trachomatis_a_har_13/Gene/Summary?g='''CTA_0588''';r=Chromosome:608460-608543;t=CTA_0588, with CTA_0578. This new URL was able to take me to the webpage particularly for this new gene CTA_0588. Hence, this URL serves as the gene database link pattern. | ||
Revision as of 18:54, 21 November 2013
HDelgadi Weeks 12,13,14
Week 12
- GO OBO-XML file for C. trachomatis serovar A.
- I clicked on Week 9 and secondly clicked on the link Perform an export of the Vibrio cholerae GenMAPP Gene Database following the instructions on this page. which is below the subheading Exporting a Vibrio cholerae Gene Database. I then clicked on 'obo-xml.gz' and the downloading box popped up, so I clicked on Save File and OK. I then opened the file, dragged it to the Desktop, and used the 7-Zip File Manager to unzip the file. I was able to extract the file 'go_daily-termdb_v1_HD_20131107.obo-xml', but I was only able to post the zipped file,Media: Go daily-termdb.obo-xml v1 HD 20131107.gz, on the Team H(oo)KD page.
Reflection
- What were the week’s key accomplishments?
- This week's key accomplishments included uploading the respective files such as GO OBO-XML file, UniProt XML, and GOA file for C. trachomatis serovar A. We also focused on how to acquire our micro-array data and how to download the particular software to help with identifying our micro-array data from our particularly different micro-array chip.
- What are next week’s target accomplishments?
- We are targeting our completion in formatting our micro-array information and focusing on starting our statistical analysis.
- What team strengths were seen this week?
- We were able to assign our individual tasks efficiently.
- What team weaknesses were seen this week?
- Some of our schedules didn't coincide too well, but we still managed to meet and work effectively.
HDelgadi (talk) 10:18, 14 November 2013 (PST)
Week 13
- bacteria.ensembl.org/chlamydia_trachomatis_a_har_13/Gene/Summary?g=~ (Gene Database Link Pattern)
- I went to the Model Organism Database, EnsemblGenome which can be found through this link, http://bacteria.ensembl.org/chlamydia_trachomatis_a_har_13/Info/Index. I then clicked on the Chromosome:592980-593522 which takes me to the genes of the
- Chlamydia trachomatis A/HAR-13. I clicked on the gene ID CTA_0588 which brought me to this webpage http://bacteria.ensembl.org/chlamydia_trachomatis_a_har_13/Gene/Summary?g=CTA_0588;r=Chromosome:608460-608543;t=CTA_0588, with further description of this gene. :I replaced the gene ID in bold within this URL, http://bacteria.ensembl.org/chlamydia_trachomatis_a_har_13/Gene/Summary?g=CTA_0588;r=Chromosome:608460-608543;t=CTA_0588, with CTA_0578. This new URL was able to take me to the webpage particularly for this new gene CTA_0588. Hence, this URL serves as the gene database link pattern.
HDelgadi (talk) 10:45, 19 November 2013 (PST)
- Link: [Protegen]
HDelgadi Project Notebook
