User contributions
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- 23:42, 28 November 2013 (diff | hist) . . (+52) . . Ksherbina Project Notebook (→November 27-28, 2013: Added a section to include the testing report for the finalized gene database)
- 10:01, 28 November 2013 (diff | hist) . . (+129) . . Ksherbina Project Notebook (→Running SQL Queries to Determine Discrepancy in the Count Between the UniProt XML and the Gene Database: Added some more results)
- 09:56, 28 November 2013 (diff | hist) . . (+204) . . Ksherbina Project Notebook (→Running SQL Queries to Determine Discrepancy in the Count Between the UniProt XML and the Gene Database: Added steps taken to view the ordered locus names in Access)
- 09:49, 28 November 2013 (diff | hist) . . (+256) . . Ksherbina Project Notebook (→Running SQL Queries to Determine Discrepancy in the Count Between the UniProt XML and the Gene Database: Recorded results of SQL query)
- 09:41, 28 November 2013 (diff | hist) . . (+195) . . Ksherbina Project Notebook (→Running SQL Queries to Determine Discrepancy in the Count Between the UniProt XML and the Gene Database: Recorded another SQL query)
- 09:17, 28 November 2013 (diff | hist) . . (0) . . Ksherbina Project Notebook (→Running SQL Queries to Determine Discrepancy in the Count Between the UniProt XML and the Gene Database: Changed bullet format)
- 09:16, 28 November 2013 (diff | hist) . . (+390) . . Ksherbina Project Notebook (→Week 14: Recorded an SQL query that was run to troubleshoot discrepancy in gene counts)
- 21:39, 24 November 2013 (diff | hist) . . (-1) . . Chlamydia trachomatis (→Important Files: Removed a bullet)
- 21:39, 24 November 2013 (diff | hist) . . (+646) . . Ksherbina Project Notebook (→Ran GenMAPP Using C. trachomatis Gene Database: Recorded the number of exceptions found and the observations made when looking at the exceptions file that was produced by GenMAPP)
- 21:09, 24 November 2013 (diff | hist) . . (+305) . . Ksherbina Project Notebook (→Ran GenMAPP Using C. trachomatis Gene Database: Added steps on importing microarray data)
- 20:58, 24 November 2013 (diff | hist) . . (+185) . . Chlamydia trachomatis (→Important Files: Added another file link)
- 20:57, 24 November 2013 (diff | hist) . . (+92) . . N File:C.trachomatis Sample Microarray Data for GenMAPP KS 20131124.txt (Tab-delimited version of the sample microarray data (needs to be in this format for GenMAPP)) (top)
- 20:52, 24 November 2013 (diff | hist) . . (+255) . . Chlamydia trachomatis (→Important Files: Added link to a sample microarray file)
- 20:49, 24 November 2013 (diff | hist) . . (+90) . . N File:C.trachomatis Sample Microarray Data for GenMAPP KS 20131124.xls (Sample microarray data for C. trachomatis made to test the new gene database with GenMAPP.) (top)
- 20:47, 24 November 2013 (diff | hist) . . (+67) . . Ksherbina Project Notebook (→Ran GenMAPP Using C. trachomatis Gene Database: Checked that GenMAPP was set to the right database,)
- 20:45, 24 November 2013 (diff | hist) . . (+78) . . Ksherbina Project Notebook (→November 24, 2013: Began recording steps)
- 20:44, 24 November 2013 (diff | hist) . . (+38) . . Ksherbina Project Notebook (Added sections to record work down on November 24, 2013)
- 08:05, 22 November 2013 (diff | hist) . . (+37) . . Chlamydia trachomatis (→Deadlines and Intermediate Milestones: Added a milestone)
- 08:00, 22 November 2013 (diff | hist) . . (+91) . . Team H(oo)KD Week 13 Status Report (→Reflection: Added signature) (top)
- 08:00, 22 November 2013 (diff | hist) . . (+423) . . Team H(oo)KD Week 13 Status Report (→Reflection: Finished questions)
- 07:56, 22 November 2013 (diff | hist) . . (+768) . . Team H(oo)KD Week 13 Status Report (→Reflection: Answered reflection question 1-2)
- 07:47, 22 November 2013 (diff | hist) . . (+179) . . Team H(oo)KD Week 13 Status Report (→Reflection: Copied the list of reflection questions.)
- 07:44, 22 November 2013 (diff | hist) . . (+91) . . Team H(oo)KD Week 13 Status Report (→Coder Status Update: Added signature)
- 07:44, 22 November 2013 (diff | hist) . . (+96) . . Team H(oo)KD Week 13 Status Report (Added a description of where to find the milestones. Italicized all occurrences of C. trachomatis.)
- 07:42, 22 November 2013 (diff | hist) . . (+1,924) . . Team H(oo)KD Week 13 Status Report (→Coder Status Update: Recorded a summary of some of the major accomplishments this week on the coding front)
- 07:01, 22 November 2013 (diff | hist) . . (+122) . . Ksherbina Project Notebook (→Performing Quality Assurance on the New Database: Recorded part of the OriginalRowCounts table in Access)
- 06:51, 22 November 2013 (diff | hist) . . (+494) . . Ksherbina Project Notebook (→Performing Quality Assurance on the New Database: Recorded count in Access and count after rerunning xmlpipedb match)
- 06:46, 22 November 2013 (diff | hist) . . (+119) . . Ksherbina Project Notebook (→Performing Quality Assurance on the New Database: Recorded order locus name count in Access)
- 06:44, 22 November 2013 (diff | hist) . . (+183) . . Ksherbina Project Notebook (→Performing Quality Assurance on the New Database: Recorded the count obtained using SQL query)
- 06:42, 22 November 2013 (diff | hist) . . (+218) . . Ksherbina Project Notebook (→Performing Quality Assurance on the New Database: Recorded the number of unique gene names using the xmlpipedb match)
- 06:31, 22 November 2013 (diff | hist) . . (+120) . . Ksherbina Project Notebook (→Performing Quality Assurance on the New Database: Recorded Tally Engine Results)
- 06:29, 22 November 2013 (diff | hist) . . (+53) . . N File:Tally Engine Results for Ct-Std v2 KS 20131121.jpg (Tally Engine count for Ct-Std_v2_KS_20131121 database) (top)
- 06:24, 22 November 2013 (diff | hist) . . (+71) . . Ksherbina Project Notebook (→Reran the Database Export With the New Build for gmbuilder: Added step about opening the newly build gmbuilder)
- 06:21, 22 November 2013 (diff | hist) . . (+58) . . Ksherbina Project Notebook (→November 21, 2013: Added a new section)
- 06:19, 22 November 2013 (diff | hist) . . (+1) . . Ksherbina Project Notebook (→=Testing the New Database with GenMAPP: Changed section name)
- 06:15, 22 November 2013 (diff | hist) . . (+1,236) . . Ksherbina Project Notebook (→November 21, 2013: Added steps regarding testing the new database in GenMAPP)
- 06:04, 22 November 2013 (diff | hist) . . (+176) . . Chlamydia trachomatis (→Important Files: Added link to newest gene database)
- 03:43, 22 November 2013 (diff | hist) . . (+62) . . Ksherbina Project Notebook (→Testing Report: Added link to database exported 11/21/13)
- 02:29, 22 November 2013 (diff | hist) . . (+155) . . Ksherbina Project Notebook (→Testing Report: Added a note about the import)
- 02:10, 22 November 2013 (diff | hist) . . (+151) . . N File:Ct-Std v2 KS 20131121.gdb (Database that was exported in the new build of gmbuilder created after adding the species specific database link to the C. trachomatis species profile.)
- 02:07, 22 November 2013 (diff | hist) . . (+88) . . Ksherbina Project Notebook (→Testing Report: Added link to gene database that was exported on 11/19/2013)
- 01:07, 22 November 2013 (diff | hist) . . (+148) . . Team H(oo)KD Week 13 Status Report (Added sections for reflections and status updates from each group member)
- 01:04, 22 November 2013 (diff | hist) . . (+16) . . N Team H(oo)KD Week 13 Status Report (Added template)
- 01:03, 22 November 2013 (diff | hist) . . (+70) . . Template:Team H(oo)KD (created link to week 13 status report)
- 00:47, 22 November 2013 (diff | hist) . . (+117) . . Ksherbina Project Notebook (→Testing Report: Added link to gdb exported 11/20-11/21. Added name of GOA file)
- 00:44, 22 November 2013 (diff | hist) . . (+396) . . Ksherbina Project Notebook (→Reran the Database Export With the New Build for gmbuilder: Added steps taken to perform database export as well as a testing report for the export)
- 19:57, 21 November 2013 (diff | hist) . . (+872) . . Ksherbina Project Notebook (→Revised the Custom Species Profile: Described how a new build of gmbuilder was performed)
- 19:48, 21 November 2013 (diff | hist) . . (+717) . . Ksherbina Project Notebook (→Revised the Custom Species Profile: Added more steps taken in Eclipse)
- 19:43, 21 November 2013 (diff | hist) . . (+348) . . Ksherbina Project Notebook (→Revised the Custom Species Profile: Specified how Eclipse was set to the JDK environment)
- 19:38, 21 November 2013 (diff | hist) . . (+697) . . Ksherbina Project Notebook (→Revised the Custom Species Profile: Added the steps to perform the initial code checkout)
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