HDelgadi Week 3

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XMLPipeDB Match Practice

    1. What Match command tallies the occurrences of the pattern GO:000916. in the 493.P_falciparum.xml file?

The command: java -jar xmlpipedb-match-1.1.1.jar "GO:000916." <493.P_falciparum.xml.

  1. How many unique matches are there?

There are two unique matches.

  1. How many times does each unique match appear?

go:0009165 appears twice and go:0009168 appears once.

  1. What information do you think the pattern GO:000916. represents?
  1. What Match command tallies the occurrences of the pattern \"James.*\" in the 493.P_falciparum.xml file?

The command: java -jar xmlpipedb-match-1.1.1.jar "\"James.*\"" < 493.P_falciparum.xml.

  1. How many unique matches are there?

There are two unique matches.

  1. How many times does each unique match appear?

"james k.d." appears 8238 times and "james a.a." appears just once.

  1. What information do you think the pattern \"James.*\" represents?
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