Malverso Week 12
From LMU BioDB 2015
Contents
Milestone 1
- I was added as a developer of the XMLPipeDB project on GitHub under the organization lmu-bioinformatics and under the team name Heavy Metal HaterZ.
- I created a GitHub branch of xmlpipedb for your team called s-oneidensis.
- I downloaded eclipse for Java Developers from this link and then extracted it using 7-zip.
- I downloaded git for windows from this link.
- I saved both of these files in the T drive of the computer (Second row from the front, third away from the door).
Milestone 2
- I saved the XMLPipeDB GitHub repository in the T drive and opened the git-bash.exe file which is in ThawSpace0 > Git.
- I cloned the repository by executing this command:
git clone https://github.com/lmu-bioinformatics/xmlpipedb.git
- I used the
cd
command to go into the clone folderxmlpipedb
:cd xmlpipedb
- Next I switched to my branch using the command:
git checkout s-oneidensis
Eclipse Workspace Setup
- Next I ran Eclipse.
- When Eclipse asked me to select a workspace, I clicked the Browse… and navigated to your repository clone folder, which was T:/Git/xmlpipedb.
- I clicked the Workbench button (upper-right corner, with a 3D arrow for an icon).
Java Project Setup
- I right-clicked within the empty Project Explorer tab and chose New > Project… from the menu that appeared.
- I chose Java Project from the list of “wizards” and clicked on the Next > button.
- On the next panel, I entered
gmbuilder
as the Project name. - I verified that the JRE section shows Java 1.8.
- i clicked on the Finish button.
Initial Build
- I opened the gmbuilder project by clicking on the gray triangle to the left of its name.
- I right-clicked on build.xml and chose Run As > 2 Ant Build...
- In the Edit Configuration dialog that appears, I unchecked dist.
- Next I checked on the clean and dist items in the Targets tab. The Target execution order section near the bottom of the dialog said clean, dist.
- I clicked the Run button.
- When it finished, I right-clicked on the gmbuilder project folder and chose Refresh from the menu that appears.
- There was a dist folder appear inside the gmbuilder project folder.
- This is my personally-built copy of GenMAPP Builder.
Team Page
Assignments
- Week 1
- Week 2
- Week 3
- Week 4
- Week 5
- Week 6
- Week 7
- Week 8
- Week 9
- Week 10
- Week 11
- Week 12
- Week 13
- Week 14
- Week 15
Individual Journal Entries
- Malverso User Page (Week 1)
- Week 2
- Week 3
- Week 4
- Week 5
- Week 6
- Week 7
- Week 8
- Week 9
- Week 10
- Week 11
- Week 12
- Week 13
- Week 14
- Week 15