Difference between revisions of "Kevin Wyllie Week 3"
From LMU BioDB 2015
(Edited my screenshot and command line to show the complementary DNA sequence from 5' -> 3' direction (by adding the rev command).) |
(Edited text to better explain the screenshot.) |
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| Line 5: | Line 5: | ||
[[Image:Kwscreenshot1.jpg|right|thumb]] | [[Image:Kwscreenshot1.jpg|right|thumb]] | ||
| − | + | Shown in green: the following command is used to open the file (using prokaryote.txt as an example), | |
cat prokaryote.txt | cat prokaryote.txt | ||
| − | while the the following command is used to sequence the complementary strand (in the 5' -> 3' direction - thus the "rev" command) | + | Shown in red: while the the following command is used to sequence the complementary strand (in the 5' -> 3' direction - thus the "rev" command), |
cat prokaryote.txt | sed "y/atgc/tacg/" | rev | cat prokaryote.txt | sed "y/atgc/tacg/" | rev | ||
Revision as of 23:41, 19 September 2015
Journal Week 3
Complement of a Strand
Shown in green: the following command is used to open the file (using prokaryote.txt as an example),
cat prokaryote.txt
Shown in red: while the the following command is used to sequence the complementary strand (in the 5' -> 3' direction - thus the "rev" command),
cat prokaryote.txt | sed "y/atgc/tacg/" | rev
