Bordetella Pertussis GenMAPP Analysis Deliverables

Group Files and Datasets

• GenMAPP Gene Database for assigned species: File:Bpertussis-std cw20151210.zip
• ReadMe file to accompany the Gene Database: File:ReadMe bpertussis-std cw20151210.docx
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• Gene Database Testing Report for final submitted Gene Database: File:Gdb testingreport cw20151210.pdf
• Processed and analyzed DNA microarray dataset: File:Bpertussis compiledrawdata cw20151208.xlsx
• Data file used for import into GenMAPP: File:Bpertussis compiledrawdata cw20151208.txt
• GenMAPP Expression Dataset file: File:Bpertussis expressiondataset cw20151213.gex
• Exceptions file of data imported into GenMAPP: File:Bpertussis expressiondataset exceptions cw20151213.EX.txt
• Raw MAPPFinder results files:
  • File:Bpertussis mappfinderresults cw20151218-Criterion1-GO.txt
  • File:Bpertussis mappfinderresults cw20151218-Criterion0-GO.txt
• .gmf file: File:Bpertussis compiledrawdata cw20151213.gmf
• Filtered MAPPFinder Results:
  • File:Bpertussis mappfinderresults filtered cw20151213-Criterion0-GO.xlsx
  • File:Bpertussis mappfinderresults filtered cw20151213-Criterion1-GO.xlsx
• Sample MAPP file of a relevant biological pathway for your species: File:Bpertussis ribosomepathway cw20151215.mapp
• Group Report describing the creation of the Gene Database and the biological analysis (.doc, .docx, or .pdf)
• PowerPoint presentation: File:Bpertussis findings powerpoint.pdf

Team Information & Links

GenMAPP Analysis of Bordetella pertussis Microarray Data

Gene Database Project Links
Overview	Deliverables	Reference Format	Guilds	Project Manager	GenMAPP User	Quality Assurance	Coder
			Teams	Heavy Metal HaterZ	The Class Whoopers	GÉNialOMICS	Oregon Trail Survivors

Journal Entries

Class Whoopers Individual Journal Entries
Brandon Klein	Week 11	Week 12	Week 14	Week 15
Lena Olufson	Week 11	Week 12	Week 14	Week 15
Mahrad Saeedi	Week 11	Week 12	Week 14	Week 15
Team Entries	Week 11	Week 12	Week 14	Week 15

Group Members

• Project Manager & Coder: Brandon Klein
• Quality Assurance: Mahrad Saeedi
• GenMAPP User: Lena Olufson
• Team Page

Team Weekly Assignments

• Week 10 Creation of page and combined annotated bibliography (midnight 11/10)
• Week 11 (midnight 11/17)
• Week 12 (midnight 11/24)
• Week 14 (midnight 12/8)
• Week 15 (midnight 12/15)