Difference between revisions of "Bhamilton18 Week 9"

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(Two tests and acknowledgments added)
(Test 2 and 3 additions)
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#We worked on the Gray Threshold + Zoom portion of the GRNsight Beta version.
 
#We worked on the Gray Threshold + Zoom portion of the GRNsight Beta version.
 
#Tests found: [[Media:GRNsight_Testing-Gray_Threshold_and_Zoom.pdf|Gray Threshold + Zoom]]
 
#Tests found: [[Media:GRNsight_Testing-Gray_Threshold_and_Zoom.pdf|Gray Threshold + Zoom]]
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#Test 1
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#Test 1 for file: '''21-genes_31-edges_Schade-data_input.xlsx'''
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#*Expected: GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file
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#*'''Expected:''' GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file
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#*Occurred: The file was unable to load, and an error message was displayed. The error message stated: "Your graph failed to load. Unable to read input. The file may be corrupt."
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#*'''Occurred:''' The file was unable to load, and an error message was displayed. The error message stated: "Your graph failed to load. Unable to read input. The file may be corrupt."
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#Test 2
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#**The file was downloaded by going to the github demo files website and "clicking" on the link to 21-genes_31-edges_Schade-data_input.xlsx. This file was then downloaded to the desktop of my computer and uploaded to the beta site.
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#*Expected: GRNsight should lay out a network graph from the SIF file if there are no errors in the file
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#**Tested this on both Safari and Chrome, and both did not display anything.
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#*Occurred:
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#Test 2 for 21-genes_31-edges_Schade-data_estimation_output.sif
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#*'''Expected:''' GRNsight should lay out a network graph from the SIF file if there are no errors in the file.
 +
#*'''Occurred:''' The file was imported, but then the screen/gene window did not display any errors or fixtures.
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#**The file was downloaded by going to the github demo files website and "clicking" on the link to 21-genes_31-edges_Schade-data_estimation_output.sif. I then clicked raw file and chose to download this file to my computer and then uploaded it to the beta site.
 +
#** Tested this on both Safari and Chrome, and both did not display anything. With Chrome the import function did not recognize any of the (sif) files on my computer, therefore I was unable to select them as an option to upload/import.
 +
#Test 3 for 21-genes_31-edges_Schade-data_estimation_output_unweighted.graphml
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#*'''Expected:''' GRNsight should lay out a network graph from the GraphML file if there are no errors in the file.
 +
#*'''Occurred:''' The file was imported, but then the screen/gene window did not display any errors or fixtures.
 +
#**The file was downloaded by going to the github demo files website and "clicking" on the link to  21-genes_31-edges_Schade-data_estimation_output_unweighted.graphml. I then clicked raw file and chose to download this file to my computer and then uploaded it to the beta site.
  
 
==Acknowledgments==
 
==Acknowledgments==

Revision as of 01:45, 30 October 2017

Notebook

Hands-On with GRNsight

  1. We worked on the Gray Threshold + Zoom portion of the GRNsight Beta version.
  2. Tests found: Gray Threshold + Zoom
  3. Test 1 for file: 21-genes_31-edges_Schade-data_input.xlsx
    • Expected: GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file
    • Occurred: The file was unable to load, and an error message was displayed. The error message stated: "Your graph failed to load. Unable to read input. The file may be corrupt."
      • The file was downloaded by going to the github demo files website and "clicking" on the link to 21-genes_31-edges_Schade-data_input.xlsx. This file was then downloaded to the desktop of my computer and uploaded to the beta site.
      • Tested this on both Safari and Chrome, and both did not display anything.
  4. Test 2 for 21-genes_31-edges_Schade-data_estimation_output.sif
    • Expected: GRNsight should lay out a network graph from the SIF file if there are no errors in the file.
    • Occurred: The file was imported, but then the screen/gene window did not display any errors or fixtures.
      • The file was downloaded by going to the github demo files website and "clicking" on the link to 21-genes_31-edges_Schade-data_estimation_output.sif. I then clicked raw file and chose to download this file to my computer and then uploaded it to the beta site.
      • Tested this on both Safari and Chrome, and both did not display anything. With Chrome the import function did not recognize any of the (sif) files on my computer, therefore I was unable to select them as an option to upload/import.
  5. Test 3 for 21-genes_31-edges_Schade-data_estimation_output_unweighted.graphml
    • Expected: GRNsight should lay out a network graph from the GraphML file if there are no errors in the file.
    • Occurred: The file was imported, but then the screen/gene window did not display any errors or fixtures.
      • The file was downloaded by going to the github demo files website and "clicking" on the link to 21-genes_31-edges_Schade-data_estimation_output_unweighted.graphml. I then clicked raw file and chose to download this file to my computer and then uploaded it to the beta site.

Acknowledgments

  1. I worked with my partner Emma Tyrnauer on this assignment.
  2. Utilized this, (Gray Threshold + Zoom) document, in order to complete our detailed GRNsight beta testing.
  3. We used three separate documents: Excel workbook (.xlsx), SIF (.sif) and GraphML (.graphml) files. These files were obtained from from this web page. The three different files that were chosen from the website were as follows:
    • 21-genes_31-edges_Schade-data_input.xlsx
    • 21-genes_31-edges_Schade-data_estimation_output.sif
    • 21-genes_31-edges_Schade-data_estimation_output_unweighted.graphml
  4. While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.

References

LMU BioDB 2017. (2017). Week 9. Retrieved October 24, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_9


Category Links
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