Difference between revisions of "Bhamilton18 Week 9"

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#Test 1 for file: '''21-genes_31-edges_Schade-data_input.xlsx'''
 
#Test 1 for file: '''21-genes_31-edges_Schade-data_input.xlsx'''
 
#*'''Expected:''' GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file
 
#*'''Expected:''' GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file
−
#*'''Occurred:''' The file was unable to load, and an error message was displayed. The error message stated: "Your graph failed to load. Unable to read input. The file may be corrupt."
+
#*'''Occurred:'''  '''''FAILED TEST''''' The file was unable to load, and an error message was displayed. The error message stated: "Your graph failed to load. Unable to read input. The file may be corrupt."
 
#**The file was downloaded by going to the github demo files website and "clicking" on the link to 21-genes_31-edges_Schade-data_input.xlsx. This file was then downloaded to the desktop of my computer and uploaded to the beta site.
 
#**The file was downloaded by going to the github demo files website and "clicking" on the link to 21-genes_31-edges_Schade-data_input.xlsx. This file was then downloaded to the desktop of my computer and uploaded to the beta site.
 
#**Tested this on both Safari and Chrome, and both did not display anything.
 
#**Tested this on both Safari and Chrome, and both did not display anything.
 
#Test 2 for '''21-genes_31-edges_Schade-data_estimation_output.sif'''
 
#Test 2 for '''21-genes_31-edges_Schade-data_estimation_output.sif'''
 
#*'''Expected:''' GRNsight should lay out a network graph from the SIF file if there are no errors in the file.
 
#*'''Expected:''' GRNsight should lay out a network graph from the SIF file if there are no errors in the file.
−
#*'''Occurred:''' The file was imported, but then the screen/gene window did not display any errors or fixtures.  
+
#*'''Occurred:'''  '''''FAILED TEST''''' The file was imported, but then the screen/gene window did not display any errors or fixtures.  
 
#**The file was downloaded by going to the github demo files website and "clicking" on the link to 21-genes_31-edges_Schade-data_estimation_output.sif. I then clicked raw file and chose to download this file to my computer and then uploaded it to the beta site.
 
#**The file was downloaded by going to the github demo files website and "clicking" on the link to 21-genes_31-edges_Schade-data_estimation_output.sif. I then clicked raw file and chose to download this file to my computer and then uploaded it to the beta site.
 
#** Tested this on both Safari and Chrome, and both did not display anything. With Chrome the import function did not recognize any of the (sif) files on my computer, therefore I was unable to select them as an option to upload/import.
 
#** Tested this on both Safari and Chrome, and both did not display anything. With Chrome the import function did not recognize any of the (sif) files on my computer, therefore I was unable to select them as an option to upload/import.
 
#Test 3 for '''21-genes_31-edges_Schade-data_estimation_output_unweighted.graphml'''
 
#Test 3 for '''21-genes_31-edges_Schade-data_estimation_output_unweighted.graphml'''
 
#*'''Expected:''' GRNsight should lay out a network graph from the GraphML file if there are no errors in the file.
 
#*'''Expected:''' GRNsight should lay out a network graph from the GraphML file if there are no errors in the file.
−
#*'''Occurred:''' The file was imported, but then the screen/gene window did not display any errors or fixtures.  
+
#*'''Occurred:''' '''''FAILED TEST''''' The file was imported, but then the screen/gene window did not display any errors or fixtures.  
 
#**The file was downloaded by going to the github demo files website and "clicking" on the link to  21-genes_31-edges_Schade-data_estimation_output_unweighted.graphml. I then clicked raw file and chose to download this file to my computer and then uploaded it to the beta site.
 
#**The file was downloaded by going to the github demo files website and "clicking" on the link to  21-genes_31-edges_Schade-data_estimation_output_unweighted.graphml. I then clicked raw file and chose to download this file to my computer and then uploaded it to the beta site.
 
#**Tested this on both Safari and Chrome, and both did not display anything.
 
#**Tested this on both Safari and Chrome, and both did not display anything.
 
#Test 4
 
#Test 4
 +
#*I used the Demo version of the '''21-genes_31-edges_Schade-data_input.xlsx''' file to complete this test.
 +
#*'''Expected:''' GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file. The graph should reload, with edges that fall below the threshold value colored gray.
 +
#*'''Occurred:''' '''''FAILED TEST''''' The Demo version for the xlsx file did not have a grey threshold option therefore the test could not be completed. Screenshot below.
 
#Test 5
 
#Test 5
 
#Test 6
 
#Test 6

Revision as of 01:59, 30 October 2017

Notebook

Hands-On with GRNsight

  1. We worked on the Gray Threshold + Zoom portion of the GRNsight Beta version.
  2. Tests found: Gray Threshold + Zoom
  3. Test 1 for file: 21-genes_31-edges_Schade-data_input.xlsx
    • Expected: GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file
    • Occurred: FAILED TEST The file was unable to load, and an error message was displayed. The error message stated: "Your graph failed to load. Unable to read input. The file may be corrupt."
      • The file was downloaded by going to the github demo files website and "clicking" on the link to 21-genes_31-edges_Schade-data_input.xlsx. This file was then downloaded to the desktop of my computer and uploaded to the beta site.
      • Tested this on both Safari and Chrome, and both did not display anything.
  4. Test 2 for 21-genes_31-edges_Schade-data_estimation_output.sif
    • Expected: GRNsight should lay out a network graph from the SIF file if there are no errors in the file.
    • Occurred: FAILED TEST The file was imported, but then the screen/gene window did not display any errors or fixtures.
      • The file was downloaded by going to the github demo files website and "clicking" on the link to 21-genes_31-edges_Schade-data_estimation_output.sif. I then clicked raw file and chose to download this file to my computer and then uploaded it to the beta site.
      • Tested this on both Safari and Chrome, and both did not display anything. With Chrome the import function did not recognize any of the (sif) files on my computer, therefore I was unable to select them as an option to upload/import.
  5. Test 3 for 21-genes_31-edges_Schade-data_estimation_output_unweighted.graphml
    • Expected: GRNsight should lay out a network graph from the GraphML file if there are no errors in the file.
    • Occurred: FAILED TEST The file was imported, but then the screen/gene window did not display any errors or fixtures.
      • The file was downloaded by going to the github demo files website and "clicking" on the link to 21-genes_31-edges_Schade-data_estimation_output_unweighted.graphml. I then clicked raw file and chose to download this file to my computer and then uploaded it to the beta site.
      • Tested this on both Safari and Chrome, and both did not display anything.
  6. Test 4
    • I used the Demo version of the 21-genes_31-edges_Schade-data_input.xlsx file to complete this test.
    • Expected: GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file. The graph should reload, with edges that fall below the threshold value colored gray.
    • Occurred: FAILED TEST The Demo version for the xlsx file did not have a grey threshold option therefore the test could not be completed. Screenshot below.
  7. Test 5
  8. Test 6
  9. Test 7
  10. Test 8
  11. Test 9
  12. Test 10
  13. Test 11
  14. Test 12
  15. Test 13
  16. Test 14
  17. Test 15
  18. Test 16
  19. Test 17
  20. Test 18

Acknowledgments

  1. I worked with my partner Emma Tyrnauer on this assignment.
  2. Utilized this, (Gray Threshold + Zoom) document, in order to complete our detailed GRNsight beta testing.
  3. We used three separate documents: Excel workbook (.xlsx), SIF (.sif) and GraphML (.graphml) files. These files were obtained from from this web page. The three different files that were chosen from the website were as follows:
    • 21-genes_31-edges_Schade-data_input.xlsx
    • 21-genes_31-edges_Schade-data_estimation_output.sif
    • 21-genes_31-edges_Schade-data_estimation_output_unweighted.graphml
  4. While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.

References

LMU BioDB 2017. (2017). Week 9. Retrieved October 24, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_9


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