Difference between revisions of "Knguye66 Week 7"
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| − | == Notes before starting == | + | <!--== Notes before starting == |
| − | * T-test | + | * T-test is this gene expression change significantly different than zero? |
* p<0.05: probability that you would have at least this big of a change by chance | * p<0.05: probability that you would have at least this big of a change by chance | ||
**ie. when we have 6189 genes, there are 6189 t-tests, are they significant? when we say there's a p<0.05, there's a 5% chance it's due to chance... meaning, if we have 6189 (5% of these are significant just by chance) | **ie. when we have 6189 genes, there are 6189 t-tests, are they significant? when we say there's a p<0.05, there's a 5% chance it's due to chance... meaning, if we have 6189 (5% of these are significant just by chance) | ||
| Line 7: | Line 7: | ||
* variation is sample measurements | * variation is sample measurements | ||
*number of samples/measurements | *number of samples/measurements | ||
| + | * ANOVA is the gene expression significantly different than zero at any time point? | ||
| + | This week we will only be doing: experimental design and getting ready | ||
| + | * starting file: excel (reference this as a link) | ||
| + | * record file name and time point for data--> | ||
== Microrray Data Analysis (wild type data) == | == Microrray Data Analysis (wild type data) == | ||
| − | === | + | ==== Purpose ==== |
| + | This week's assignment is to finish the requirements for "Experimental Design and Getting Ready" | ||
| − | ==== | + | ==== Methods/Results ==== |
| − | + | * Download file, re-name, and upload onto wiki page | |
| − | + | * Strain observed: wild-type (wt) | |
| − | + | * Number of replicates: 5 (0-4) for each time point (t15, t30, t60, t90, t120) | |
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==== Data and Files ==== | ==== Data and Files ==== | ||
| + | *File: [[File:WildType_knguye66_Microarray wt.xlsx]] | ||
==== Conclusion ==== | ==== Conclusion ==== | ||
| + | N/A | ||
== Acknowledgements == | == Acknowledgements == | ||
| − | This section is in acknowledgement to partner Christina Dominguez [[User:Cdomin12]], as well as, Marcus Avila [[User:Mavila9]] and Jonar Cowan [[User:Jcowan4]] | + | This section is in acknowledgement to partner Christina Dominguez ([[User:Cdomin12]]), as well as, Marcus Avila ([[User:Mavila9]]) and Jonar Cowan ([[User:Jcowan4]]). |
| − | "Except for what is noted above, this individual journal entry was completed by me and not copied from another source." | + | "Except for what is noted above, this individual journal entry was completed by me and not copied from another source." [[User:Knguye66|Knguye66]] ([[User talk:Knguye66|talk]]) 16:11, 16 October 2019 (PDT) |
{{Template:knguye66}} | {{Template:knguye66}} | ||
== References == | == References == | ||
Latest revision as of 15:11, 16 October 2019
Contents
Microrray Data Analysis (wild type data)
Purpose
This week's assignment is to finish the requirements for "Experimental Design and Getting Ready"
Methods/Results
- Download file, re-name, and upload onto wiki page
- Strain observed: wild-type (wt)
- Number of replicates: 5 (0-4) for each time point (t15, t30, t60, t90, t120)
Data and Files
Conclusion
N/A
Acknowledgements
This section is in acknowledgement to partner Christina Dominguez (User:Cdomin12), as well as, Marcus Avila (User:Mavila9) and Jonar Cowan (User:Jcowan4).
"Except for what is noted above, this individual journal entry was completed by me and not copied from another source." Knguye66 (talk) 16:11, 16 October 2019 (PDT)
User Page
User:knguye66
Template Page
Template:knguye66
