Difference between revisions of "Knguye66 Week 7"
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(→Microrray Data Analysis (wild type data): add answers and files) |
(→Microrray Data Analysis (wild type data): finish week 7) |
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==== Purpose ==== | ==== Purpose ==== | ||
This week's assignment is to finish the requirements for "Experimental Design and Getting Ready" | This week's assignment is to finish the requirements for "Experimental Design and Getting Ready" | ||
| + | |||
==== Methods/Results ==== | ==== Methods/Results ==== | ||
* Download file, re-name, and upload onto wiki page | * Download file, re-name, and upload onto wiki page | ||
| + | * Strain observed: wild-type (wt) | ||
| + | * Number of replicates: 5 (0-4) for each time point (t15, t30, t60, t90, t120) | ||
==== Data and Files ==== | ==== Data and Files ==== | ||
| Line 26: | Line 29: | ||
==== Conclusion ==== | ==== Conclusion ==== | ||
| + | N/A | ||
== Acknowledgements == | == Acknowledgements == | ||
Revision as of 15:09, 16 October 2019
Contents
Notes before starting
- T-test -> is this gene expression change significantly different than zero?
- p<0.05: probability that you would have at least this big of a change by chance
- ie. when we have 6189 genes, there are 6189 t-tests, are they significant? when we say there's a p<0.05, there's a 5% chance it's due to chance... meaning, if we have 6189 (5% of these are significant just by chance)
- magnitude of difference
- variation is sample measurements
- number of samples/measurements
- ANOVA --> is the gene expression significantly different than zero at any time point?
This week we will only be doing: experimental design and getting ready
- starting file: excel (reference this as a link)
- record file name and time point for data
Microrray Data Analysis (wild type data)
Purpose
This week's assignment is to finish the requirements for "Experimental Design and Getting Ready"
Methods/Results
- Download file, re-name, and upload onto wiki page
- Strain observed: wild-type (wt)
- Number of replicates: 5 (0-4) for each time point (t15, t30, t60, t90, t120)
Data and Files
Conclusion
N/A
Acknowledgements
This section is in acknowledgement to partner Christina Dominguez (User:Cdomin12), as well as, Marcus Avila (User:Mavila9) and Jonar Cowan (User:Jcowan4).
"Except for what is noted above, this individual journal entry was completed by me and not copied from another source."
User Page
User:knguye66
Template Page
Template:knguye66
