Sulfiknights Deliverables

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Sulfiknight Links
BIOL Databases Main Page Sulfiknights: Project Overview Page Final Project Deliverables Requirements Sulfiknights: Final Project Deliverables Members Project Manager & Quality Assurance: Naomi Tesfaiohannes Quality Assurance: Joey Nimmers-Minor Data Analysis: Ivy-Quynh Macaraeg & Marcus Avila Designer: DeLisa Madere
Assignment Pages Week 11 Week 12/13 Week 15

Template:Sulfiknights

Checklist:

  1. Organized Team deliverables wiki page (or other media (CD or flash drive) with table of contents) INCOMPLETE
  2. Group Report (.doc, .docx or .pdf file) INCOMPLETE
  3. Individual statements of work, assessments, reflections (wiki page, .doc, .docx, .pdf, or e-mailed to Dr. Dahlquist)INCOMPLETE
  4. Group PowerPoint presentation (given on Tuesday, December 10, .ppt, .pptx or .pdf file) INCOMPLETE
  5. Excel spreadsheet with ANOVA results/stem formatting (.xlsx) COMPLETE
  6. PowerPoint of ANOVA table, screenshots of stem results (.pptx), screenshot of black and white GRNsight input network and colored GRNsight output networks COMPLETE
  7. Gene List and GO List files from each significant profile (.txt compressed together in a .zip file) COMPLETE
  8. YEASTRACT "rank by TF" results (.xlsx) COMPLETE
  9. GRNmap input workbook (with network adjacency matrix, .xlsx) COMPLETE
  10. GRNmap output workbook (.xlsx) and output plots (.jpg) zipped together COMPLETE
  11. MS Access database, unified by the three teams with expression tables and metadata table(s) created (.accdb) COMPLETE
  12. ReadMe for the database that describes the design of the database, references the sources of the data, and has a database schema diagram (.doc, .docx, .pdf) INCOMPLETE
  13. Query design for populating a GRNmap input workbook from the database (screenshot of MS Access, or SQL code, .txt) COMPLETE
  14. Electronic notebook corresponding to these the microarray results files (Week 12/13 and Week 15) to support reproducible research so that all manipulations of the data and files are documented so that someone else could begin with your starting file, follow the protocol, and obtain your results. INCOMPLETE

Group Report

Individual Statements of Work, Assessments, Reflections

Group Powerpoint Presentation

Excel Spreadsheet with ANOVA Results/STEM Formatting

Thorsen Data (Updated 12/2/19)

PowerPoint of ANOVA Table...

PowerPoint of ANOVA table and Screenshots of STEM Profile Results

Profiles 9 and 23 input network (Excel)

Profil923 GRNsight matrix.PNG Colored GRNsight 923.PNG

Profile 40 and 48 input network (Excel)

Profile4048 GRNsight matrix.PNG Colored GRNsight 4048.PNG

Gene List and GO List files

Zipped Gene Lists for Significant Profiles

Zipped GOLists for Significant Profiles

YEASTRACT "Rank by TF" Results

Profiles 9 and 23

Profiles 40 and 48

GRNmap input workbook

GRNmap Input Worksheet: Profiles 9 and 23

GRNmap Input Worksheet: Profiles 40 and 48

GRNmap output workbook and output plots

GRNmap Output Files: Profiles 9 and 23

GRNmap Output Files: Profiles 40 and 48

MS Access database

MS Access Database of Thorsen & Dahlquist data

ReadMe

Query design for populating a GRNmap input workbook from the database

Profiles 9 and 23:

350 350 Thorsen 2007 log2 expression 923 querydesign.PNG

Profiles 40 and 48:

350 350 Thorsen 2007 log2 expression QueryDesign.PNG

Electronic notebook corresponding to the microarray results files

Merge completed databases into a single database

BIOL_478_-_Sulfiknights_BioDB_CombinedDatabase.zip ‎

Access_Database_Schema_Screenshot.PNG