Ajvree Week 15
From LMU BioDB 2013
12/3/13
Comparing gene id's in excel:
- first search in xmlmatch:
- searched for SP_[0-9][0-9][0-9][0-9] in uniprot file
- got 2126 match results
- saved to text file
- used excel to compare lists
- to convert match id's from SP_#### to SP####, used control F (search/replace function) to replace underscore with a 'no space'
- link to instructions for excel match comparison found here: [[1]]
- NO Matches found, all results were N/A
- Excel File: ID Comparison
- Out of all 333 Gene ID's, none were found in original XML file, so those errors cannot be fixed
Visual Representation of Data Information
- Finished in-class 12/3/13
Compilation of Counting Totals/Visual Information
- Began word document with all visual counting results in one place
- still missing information regarding comparisons to microarray data and MOD
- File: (uploaded as pdf since wiki refused to upload it as a .doc) PDF
12/5/13
Updating of Export 4 Testing Page
- Added relevant information to Tally Engine, XMLPipeDB, Row Counts, SQL, (etc) sections.
- Reformatted images and added images previously found on Export 1 page.
Links
Alina's User Page | Kevin's User Page | Tauras's User Page |
Biological Databases Class Page | Gene Database Project | Gene Database Project Report Guidelines |
- Import Export Cycle 1: tATK Export One: TIGR4 Testing Report
- Import Export Cycle 2: tATK E2: TIGR4 Testing Report
- Import Export Cycle 3: tATK E3: TIGR4 Testing Report
- Import Export Cycle 4: tATK E4: TIGR4 Testing Report
Project Roles: | Project Manager | Coder | GenMAPP User | Quality Assurance |